57 homologs were found in PanDaTox collection
for query gene Tbd_0006 on replicon NC_007404
Organism: Thiobacillus denitrificans ATCC 25259



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007404  Tbd_0006  hypothetical protein  100 
 
 		 151 aa  311  9.999999999999999e-85  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008781  Pnap_4000  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  74.17 
 
 		 150 aa  230  5e-60  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.166717  normal  1 
 
 
-
 
NC_010622  Bphy_2360  pyridoxamine 5'-phosphate oxidase-related FMN-binding  72.85 
 
 		 150 aa  229  9e-60  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.233006 
 
 
-
 
NC_007908  Rfer_2436  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  72.19 
 
 		 150 aa  225  1e-58  Rhodoferax ferrireducens T118  Bacteria  decreased coverage  0.000271809  n/a   
 
 
-
 
NC_011901  Tgr7_1947  pyridoxamine 5'-phosphate oxidase-related FMN-binding  69.33 
 
 		 155 aa  214  4e-55  Thioalkalivibrio sp. HL-EbGR7  Bacteria  hitchhiker  0.000031905  n/a   
 
 
-
 
NC_013889  TK90_2082  pyridoxamine 5'-phosphate oxidase-related FMN-binding protein  66.67 
 
 		 155 aa  208  2e-53  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.510158  normal  1 
 
 
-
 
NC_007348  Reut_B5702  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  65.56 
 
 		 150 aa  201  2e-51  Ralstonia eutropha JMP134  Bacteria  normal  0.884169  n/a   
 
 
-
 
NC_007964  Nham_1962  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  61.11 
 
 		 158 aa  148  2e-35  Nitrobacter hamburgensis X14  Bacteria  normal  0.181208  n/a   
 
 
-
 
NC_010338  Caul_3763  pyridoxamine 5'-phosphate oxidase-related FMN-binding  41.91 
 
 		 166 aa  107  6e-23  Caulobacter sp. K31  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010338  Caul_0850  pyridoxamine 5'-phosphate oxidase-related FMN-binding  40.94 
 
 		 155 aa  104  4e-22  Caulobacter sp. K31  Bacteria  normal  0.119424  normal  0.155123 
 
 
-
 
NC_010338  Caul_2456  pyridoxamine 5'-phosphate oxidase-related FMN-binding  45.93 
 
 		 171 aa  100  6e-21  Caulobacter sp. K31  Bacteria  normal  0.502325  normal  0.600278 
 
 
-
 
NC_007955  Mbur_1693  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  35.21 
 
 		 148 aa  87  7e-17  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.00000026689  n/a   
 
 
-
 
NC_007355  Mbar_A3000  hypothetical protein  32.21 
 
 		 146 aa  82.4  0.000000000000002  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.225555  decreased coverage  0.000458503 
 
 
-
 
NC_007517  Gmet_2113  pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein  33.33 
 
 		 158 aa  68.6  0.00000000003  Geobacter metallireducens GS-15  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002939  GSU2998  nitroimidazole resistance protein, putative  28.79 
 
 		 180 aa  51.6  0.000003  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_012669  Bcav_4137  pyridoxamine 5'-phosphate oxidase-related protein FMN-binding  39.39 
 
 		 172 aa  50.4  0.000009  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.428154  normal  1 
 
 
-
 
NC_013739  Cwoe_5786  pyridoxamine 5'-phosphate oxidase-related FMN- binding protein  32.23 
 
 		 155 aa  50.4  0.000009  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  0.313411 
 
 
-
 
NC_013131  Caci_7774  pyridoxamine 5'-phosphate oxidase-related FMN- binding  39.24 
 
 		 129 aa  50.1  0.00001  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_8252  hypothetical protein  30 
 
 		 154 aa  49.3  0.00002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.625499  decreased coverage  0.00874096 
 
 
-
 
NC_013441  Gbro_3217  PPOX class putative F420-dependent enzyme  28.47 
 
 		 166 aa  47.8  0.00006  Gordonia bronchialis DSM 43247  Bacteria  normal  0.732162  n/a   
 
 
-
 
NC_009380  Strop_2632  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  31.37 
 
 		 160 aa  47  0.00009  Salinispora tropica CNB-440  Bacteria  normal  0.224595  normal  0.27403 
 
 
-
 
NC_009953  Sare_2829  pyridoxamine 5'-phosphate oxidase-related FMN-binding  30.77 
 
 		 159 aa  46.6  0.0001  Salinispora arenicola CNS-205  Bacteria  normal  1  normal  0.0474481 
 
 
-
 
NC_009338  Mflv_0791  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  27.74 
 
 		 165 aa  46.2  0.0002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_3594  pyridoxamine 5'-phosphate oxidase-related FMN- binding protein  37.66 
 
 		 132 aa  46.2  0.0002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0641507  normal  1 
 
 
-
 
NC_013526  Tter_2143  pyridoxamine 5'-phosphate oxidase-related FMN- binding protein  33.33 
 
 		 137 aa  46.2  0.0002  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  1  n/a   
 
 
-
 
NC_013510  Tcur_0029  pyridoxamine 5'-phosphate oxidase-related FMN- binding protein  31.47 
 
 		 176 aa  45.8  0.0002  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_014210  Ndas_4464  putative F420-dependent enzyme  32.28 
 
 		 128 aa  45.4  0.0003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009077  Mjls_0041  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  27.4 
 
 		 169 aa  44.7  0.0004  Mycobacterium sp. JLS  Bacteria  normal  0.299884  normal  0.0534302 
 
 
-
 
NC_013595  Sros_8501  hypothetical protein  27.93 
 
 		 137 aa  44.7  0.0004  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008146  Mmcs_0051  pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein  27.4 
 
 		 169 aa  44.7  0.0004  Mycobacterium sp. MCS  Bacteria  normal  0.158303  n/a   
 
 
-
 
NC_008705  Mkms_0060  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  27.4 
 
 		 169 aa  44.7  0.0004  Mycobacterium sp. KMS  Bacteria  normal  1  normal  0.0501649 
 
 
-
 
NC_008148  Rxyl_1056  pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein  30.4 
 
 		 135 aa  45.1  0.0004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.991641  n/a   
 
 
-
 
NC_008726  Mvan_0059  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  25.74 
 
 		 165 aa  44.3  0.0005  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  1  normal  0.291977 
 
 
-
 
NC_009565  TBFG_13006  hypothetical protein  32.38 
 
 		 163 aa  44.3  0.0006  Mycobacterium tuberculosis F11  Bacteria  normal  0.0109972  normal  1 
 
 
-
 
NC_013131  Caci_6087  pyridoxamine 5'-phosphate oxidase-related FMN- binding  41.27 
 
 		 129 aa  44.3  0.0006  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  0.116644 
 
 
-
 
NC_013093  Amir_7022  pyridoxamine 5'-phosphate oxidase-related FMN- binding  28.23 
 
 		 143 aa  44.3  0.0006  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_011060  Ppha_0917  pyridoxamine 5'-phosphate oxidase-related FMN-binding  31.43 
 
 		 170 aa  44.3  0.0006  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.688385  n/a   
 
 
-
 
NC_008726  Mvan_5116  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  44.83 
 
 		 170 aa  43.9  0.0007  Mycobacterium vanbaalenii PYR-1  Bacteria  decreased coverage  0.00582982  normal  0.597944 
 
 
-
 
NC_013173  Dbac_0289  pyridoxamine 5'-phosphate oxidase-related FMN- binding  26.87 
 
 		 157 aa  44.3  0.0007  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  1  n/a   
 
 
-
 
NC_013159  Svir_38270  Pyridoxamine 5'-phosphate oxidase  28.38 
 
 		 161 aa  43.9  0.0007  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013131  Caci_6484  pyridoxamine 5'-phosphate oxidase-related FMN- binding  35.23 
 
 		 122 aa  43.5  0.0009  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_2725  hypothetical protein  30.53 
 
 		 172 aa  43.5  0.001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.381654  normal  1 
 
 
-
 
NC_007333  Tfu_2318  hypothetical protein  29.66 
 
 		 133 aa  43.5  0.001  Thermobifida fusca YX  Bacteria  normal  0.238988  n/a   
 
 
-
 
NC_012669  Bcav_0832  pyridoxamine 5'-phosphate oxidase-related protein FMN-binding  46.03 
 
 		 144 aa  43.1  0.001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.748606  normal  0.753122 
 
 
-
 
NC_008148  Rxyl_1184  pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein  38.71 
 
 		 141 aa  43.5  0.001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.230924  n/a   
 
 
-
 
NC_013440  Hoch_6357  PPOX class putative F420-dependent enzyme  30.77 
 
 		 131 aa  42.7  0.002  Haliangium ochraceum DSM 14365  Bacteria  normal  1  normal  0.882388 
 
 
-
 
NC_013739  Cwoe_2340  PPOX class putative F420-dependent enzyme  34.72 
 
 		 143 aa  42.7  0.002  Conexibacter woesei DSM 14684  Bacteria  normal  0.776273  normal  0.0697845 
 
 
-
 
NC_014165  Tbis_0846  pyridoxamine 5'-phosphate oxidase-related FMN- binding protein  29.92 
 
 		 125 aa  42.7  0.002  Thermobispora bispora DSM 43833  Bacteria  normal  0.303881  normal  0.0908937 
 
 
-
 
NC_010085  Nmar_0178  pyridoxamine 5'-phosphate oxidase-related FMN-binding  23.08 
 
 		 133 aa  42  0.003  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal  0.210091 
 
 
-
 
NC_009921  Franean1_0365  pyridoxamine 5'-phosphate oxidase-related FMN-binding  35.9 
 
 		 130 aa  42  0.003  Frankia sp. EAN1pec  Bacteria  normal  0.0234579  hitchhiker  0.00208222 
 
 
-
 
NC_008699  Noca_2812  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  22.39 
 
 		 165 aa  42  0.003  Nocardioides sp. JS614  Bacteria  normal  0.705928  n/a   
 
 
-
 
NC_007498  Pcar_3010  hypothetical protein  28.15 
 
 		 148 aa  42  0.003  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000000030092  n/a   
 
 
-
 
NC_008726  Mvan_4567  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  35.21 
 
 		 147 aa  40.8  0.006  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  1  normal  0.413715 
 
 
-
 
NC_013131  Caci_5545  pyridoxamine 5'-phosphate oxidase-related FMN- binding  35.21 
 
 		 142 aa  40.4  0.008  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010085  Nmar_1106  pyridoxamine 5'-phosphate oxidase-related FMN-binding  22.92 
 
 		 216 aa  40.4  0.009  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal  1 
 
 
-
 
NC_009921  Franean1_0582  pyridoxamine 5'-phosphate oxidase-related FMN-binding  35.94 
 
 		 150 aa  40.4  0.009  Frankia sp. EAN1pec  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009943  Dole_2144  pyridoxamine 5'-phosphate oxidase-related FMN-binding  27.93 
 
 		 147 aa  40  0.01  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
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