42 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Caul_0012  CDS  NC_010338  20020  21054  +  1035  tryptophanyl-tRNA synthetase  YP_001681648  decreased coverage  0.00178071  normal  1  Caulobacter sp. K31  Bacteria 
 
 
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Caul_0138  CDS  NC_010338  151893  152516  +  624  hypothetical protein  YP_001681774  decreased coverage  0.00943945  normal  1  Caulobacter sp. K31  Bacteria 
 
 
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Caul_0324  CDS  NC_010338  369308  371281  -  1974  N-6 DNA methylase  YP_001681959  decreased coverage  0.00528654  normal  1  Caulobacter sp. K31  Bacteria 
 
 
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Caul_1022  CDS  NC_010338  1082494  1082913  -  420  FliJ protein  YP_001682650  decreased coverage  0.00652021  normal  1  Caulobacter sp. K31  Bacteria 
 
 
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Caul_1266  CDS  NC_010338  1326288  1326599  -  312  hypothetical protein  YP_001682894  decreased coverage  0.00853794  normal  0.0139586  Caulobacter sp. K31  Bacteria 
 
 
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Caul_1269  CDS  NC_010338  1328096  1329052  -  957  HxlR family transcriptional regulator  YP_001682897  normal  0.178567  decreased coverage  0.00270462  Caulobacter sp. K31  Bacteria 
 
 
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Caul_1282  CDS  NC_010338  1347156  1348214  -  1059  aldo/keto reductase  YP_001682910  normal  1  decreased coverage  0.0039468  Caulobacter sp. K31  Bacteria 
 
 
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Caul_1787  CDS  NC_010338  1889144  1889683  -  540  protein tyrosine phosphatase  YP_001683414  normal  1  decreased coverage  0.00981569  Caulobacter sp. K31  Bacteria 
 
 
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Caul_1843  CDS  NC_010338  1960245  1963496  +  3252  TonB-dependent receptor  YP_001683470  unclonable  0.0000000198025  decreased coverage  0.000327731  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2043  CDS  NC_010338  2184131  2185108  +  978  tRNA-dihydrouridine synthase A  YP_001683669  decreased coverage  0.00353768  normal  0.913937  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2045  CDS  NC_010338  2185890  2186249  +  360  hypothetical protein  YP_001683671  decreased coverage  0.00159761  normal  1  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2092  CDS  NC_010338  2240584  2241003  +  420  putative general secretion pathway protein H  YP_001683718  decreased coverage  0.00990757  normal  0.860283  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2142  CDS  NC_010338  2317924  2321028  +  3105  TonB-dependent receptor  YP_001683768  decreased coverage  0.0000142845  normal  0.0159239  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2181  CDS  NC_010338  2371174  2371515  -  342  excinuclease ABC subunit C  YP_001683807  decreased coverage  0.00892068  normal  0.804262  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2409  CDS  NC_010338  2628457  2629491  +  1035  hypothetical protein  YP_001684034  decreased coverage  0.00000000110953  normal  0.355489  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2410  CDS  NC_010338  2629526  2631601  -  2076  Alpha-N-arabinofuranosidase  YP_001684035  decreased coverage  0.00000000106036  normal  0.27509  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2636  CDS  NC_010338  2858025  2858903  +  879  transglutaminase domain-containing protein  YP_001684261  decreased coverage  0.000217317  normal  1  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2664  CDS  NC_010338  2897278  2897901  +  624  cysteine dioxygenase type I  YP_001684289  decreased coverage  0.000978077  normal  0.382452  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2735  CDS  NC_010338  2970604  2972529  +  1926  TonB-dependent receptor  YP_001684360  decreased coverage  0.00964506  normal  0.0993289  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2799  CDS  NC_010338  3039445  3040650  -  1206  1-deoxy-D-xylulose 5-phosphate reductoisomerase  YP_001684424  decreased coverage  0.00337328  normal  0.315561  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2839  CDS  NC_010338  3078070  3079302  -  1233  glycosyl transferase group 1  YP_001684464  decreased coverage  0.000929043  normal  0.0434623  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2895  CDS  NC_010338  3143093  3143950  +  858  hypothetical protein  YP_001684520  normal  0.068236  decreased coverage  0.0048069  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2896  CDS  NC_010338  3144096  3144467  -  372  hypothetical protein  YP_001684521  normal  0.039157  decreased coverage  0.00427012  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_2897  CDS  NC_010338  3144495  3145307  -  813  UspA domain-containing protein  YP_001684522  normal  0.185015  decreased coverage  0.00487068  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2940  CDS  NC_010338  3189411  3189722  -  312  phosphopantetheine-binding  YP_001684565  decreased coverage  0.00116995  normal  1  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_3404  CDS  NC_010338  3677702  3678697  -  996  D-alanine--D-alanine ligase  YP_001685029  normal  0.115962  decreased coverage  0.00803245  Caulobacter sp. K31  Bacteria 
 
 
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Caul_3669  CDS  NC_010338  3963749  3965158  -  1410  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase  YP_001685294  decreased coverage  0.00445508  normal  0.10958  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_3797  CDS  NC_010338  4113202  4113567  +  366  hypothetical protein  YP_001685421  decreased coverage  0.000000371687  hitchhiker  0.0000203227  Caulobacter sp. K31  Bacteria 
 
 
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Caul_3833  CDS  NC_010338  4152296  4153660  +  1365  conjugal transfer protein TrbL  YP_001685457  decreased coverage  0.00915506  normal  1  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_3851  CDS  NC_010338  4166515  4167165  +  651  protocatechuate 3,4-dioxygenase, alpha subunit  YP_001685475  decreased coverage  0.00660482  normal  0.519144  Caulobacter sp. K31  Bacteria 
 
 
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Caul_4111  CDS  NC_010338  4467778  4468110  -  333  glutathione-dependent formaldehyde-activating GFA  YP_001685733  decreased coverage  0.000937447  normal  0.58926  Caulobacter sp. K31  Bacteria 
 
 
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Caul_4150  CDS  NC_010338  4501482  4503128  -  1647  chaperonin GroEL  YP_001685772  decreased coverage  0.00153421  normal  0.471865  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_4663  CDS  NC_010338  5041201  5042373  -  1173  ABC-2 type transporter  YP_001686281  decreased coverage  0.000515456  normal  1  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_4732  CDS  NC_010338  5119652  5119975  -  324  small multidrug resistance protein  YP_001686350  normal  1  decreased coverage  0.00175948  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_4733  CDS  NC_010338  5120157  5120897  -  741  hypothetical protein  YP_001686351  normal  1  decreased coverage  0.00188932  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_4737  CDS  NC_010338  5122858  5124486  -  1629  F0F1 ATP synthase subunit beta  YP_001686355  normal  0.603739  decreased coverage  0.00210198  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_4738  CDS  NC_010338  5124544  5125428  -  885  F0F1 ATP synthase subunit gamma  YP_001686356  normal  0.439609  decreased coverage  0.00190337  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_4809  CDS  NC_010338  5203721  5204830  +  1110  hypothetical protein  YP_001686427  decreased coverage  0.00137373  normal  1  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_5019  CDS  NC_010338  5421889  5423310  +  1422  transcription termination factor Rho  YP_001686637  decreased coverage  0.000339489  normal  1  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_5020  CDS  NC_010338  5423458  5424423  -  966  alcohol dehydrogenase  YP_001686638  decreased coverage  0.00109136  normal  1  Caulobacter sp. K31  Bacteria 
 
 
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Caul_5021  CDS  NC_010338  5424430  5425137  -  708  carboxymethylenebutenolidase  YP_001686639  decreased coverage  0.0018188  normal  1  Caulobacter sp. K31  Bacteria 
 
 
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Caul_5081  CDS  NC_010335  1415  2725  +  1311  peptidase S10 serine carboxypeptidase  YP_001676515  decreased coverage  0.00000000372495  normal  0.0461552  Caulobacter sp. K31  Bacteria 
 
 
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