28 homologs were found in PanDaTox collection
for query gene TDE1305 on replicon NC_002967
Organism: Treponema denticola ATCC 35405



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002967  TDE1305  DNA-binding protein  100 
 
 
72 aa  149  1e-35  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3914  transcriptional regulator, XRE family  37.93 
 
 
81 aa  52  0.000003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1891  transcriptional regulator, XRE family  44.64 
 
 
117 aa  48.9  0.00002  Desulfohalobium retbaense DSM 5692  Bacteria  decreased coverage  0.00988673  normal  0.0163804 
 
 
-
 
NC_011832  Mpal_1123  transcriptional regulator, XRE family  46.15 
 
 
66 aa  48.9  0.00002  Methanosphaerula palustris E1-9c  Archaea  normal  normal  0.503479 
 
 
-
 
NC_007355  Mbar_A0692  XRE family transcriptional regulator  39.22 
 
 
74 aa  43.1  0.001  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.782082  normal  0.118291 
 
 
-
 
NC_007925  RPC_3514  XRE family transcriptional regulator  34.55 
 
 
471 aa  43.5  0.001  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.15562 
 
 
-
 
NC_009620  Smed_4240  hypothetical protein  33.33 
 
 
472 aa  43.1  0.001  Sinorhizobium medicae WSM419  Bacteria  normal  0.726169  normal 
 
 
-
 
NC_013224  Dret_2503  transcriptional regulator, XRE family  39.22 
 
 
117 aa  42.7  0.002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_2363  transcriptional regulator, XRE family  37.25 
 
 
117 aa  42.4  0.002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2570  transcriptional regulator, XRE family  44.68 
 
 
116 aa  42.7  0.002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2140  transcriptional regulator, XRE family  33.85 
 
 
120 aa  42  0.003  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_0048  XRE family transcriptional regulator  26.87 
 
 
488 aa  42  0.003  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011370  Rleg2_6140  transcriptional regulator, XRE family  33.33 
 
 
466 aa  41.6  0.004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.29056  normal  0.20843 
 
 
-
 
NC_013441  Gbro_0761  hypothetical protein  34.55 
 
 
475 aa  41.2  0.005  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0650  transcriptional regulator, XRE family  38.98 
 
 
110 aa  41.2  0.005  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_2004  hypothetical protein  30.16 
 
 
470 aa  41.2  0.005  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.860284  n/a   
 
 
-
 
NC_009483  Gura_3435  XRE family transcriptional regulator  37.5 
 
 
116 aa  41.2  0.005  Geobacter uraniireducens Rf4  Bacteria  normal  0.0322036  n/a   
 
 
-
 
NC_009486  Tpet_1451  helix-turn-helix domain-containing protein  52.94 
 
 
127 aa  40.8  0.007  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1114  XRE family plasmid maintenance system antidote protein  40 
 
 
120 aa  40.4  0.007  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1496  XRE family transcriptional regulator  52.94 
 
 
110 aa  40.4  0.008  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_2007  transcriptional regulator, XRE family  36.96 
 
 
471 aa  40.4  0.008  Actinosynnema mirum DSM 43827  Bacteria  normal  0.464836  n/a   
 
 
-
 
NC_008609  Ppro_3124  XRE family transcriptional regulator  43.14 
 
 
76 aa  40.4  0.008  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2268  XRE family transcriptional regulator  42 
 
 
201 aa  40.4  0.009  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.924655  normal  0.398688 
 
 
-
 
NC_008048  Sala_2208  XRE family transcriptional regulator  37.25 
 
 
73 aa  40.4  0.009  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.0421873 
 
 
-
 
NC_010581  Bind_3598  XRE family transcriptional regulator  30.91 
 
 
477 aa  40  0.01  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.149473  normal 
 
 
-
 
NC_009952  Dshi_0716  transcriptional regulator  36.07 
 
 
464 aa  40  0.01  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.582865  normal 
 
 
-
 
NC_009513  Lreu_1039  XRE family transcriptional regulator  32.81 
 
 
264 aa  40  0.01  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000101655  n/a   
 
 
-
 
NC_007796  Mhun_0152  XRE family transcriptional regulator  34.43 
 
 
236 aa  40  0.01  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
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