61 homologs were found in PanDaTox collection
for query gene Plav_1434 on replicon NC_009719
Organism: Parvibaculum lavamentivorans DS-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009719  Plav_1434  succinate dehydrogenase hydrophobic membrane anchor  100 
 
 
141 aa  283  4e-76  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_009505  BOV_1831  succinate dehydrogenase, hydrophobic membrane anchor protein  49.21 
 
 
131 aa  134  4e-31  Brucella ovis ATCC 25840  Bacteria  normal  0.405977  n/a   
 
 
-
 
NC_004310  BR1903  succinate dehydrogenase, hydrophobic membrane anchor protein, putative  49.21 
 
 
131 aa  134  5e-31  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0952  succinate dehydrogenase hydrophobic membrane anchor  47.62 
 
 
131 aa  130  5e-30  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.676521  n/a   
 
 
-
 
NC_009636  Smed_2958  succinate dehydrogenase hydrophobic membrane anchor  50.41 
 
 
126 aa  121  3e-27  Sinorhizobium medicae WSM419  Bacteria  normal  0.0363094  normal 
 
 
-
 
NC_008254  Meso_3245  succinate dehydrogenase subunit D  48.8 
 
 
127 aa  117  3.9999999999999996e-26  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3979  succinate dehydrogenase, hydrophobic membrane anchor protein  47.15 
 
 
126 aa  116  9.999999999999999e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.705456  normal  0.476216 
 
 
-
 
NC_010581  Bind_2750  succinate dehydrogenase, hydrophobic membrane anchor protein  44.8 
 
 
130 aa  116  9.999999999999999e-26  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3691  succinate dehydrogenase, hydrophobic membrane anchor protein  47.15 
 
 
126 aa  115  1.9999999999999998e-25  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_4136  succinate dehydrogenase hydrophobic membrane anchor  47.15 
 
 
126 aa  115  3e-25  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_3617  succinate dehydrogenase, cytochrome b subunit  48 
 
 
133 aa  111  3e-24  Nitrobacter hamburgensis X14  Bacteria  normal  0.0610127  n/a   
 
 
-
 
NC_007778  RPB_0326  succinate dehydrogenase, cytochrome b subunit  42.03 
 
 
140 aa  111  4.0000000000000004e-24  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0217  succinate dehydrogenase, hydrophobic membrane anchor protein  43.75 
 
 
137 aa  110  5e-24  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.294581  n/a   
 
 
-
 
NC_007406  Nwi_2799  succinate dehydrogenase, cytochrome b subunit  47.73 
 
 
135 aa  109  1.0000000000000001e-23  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_1966  succinate dehydrogenase hydrophobic membrane anchor  42.96 
 
 
135 aa  108  3e-23  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.192092 
 
 
-
 
NC_007925  RPC_0071  succinate dehydrogenase, cytochrome b subunit  41.41 
 
 
140 aa  105  2e-22  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3601  succinate dehydrogenase, hydrophobic membrane anchor protein  44.35 
 
 
139 aa  104  5e-22  Methylobacterium extorquens PA1  Bacteria  normal  0.0736554  normal 
 
 
-
 
NC_007958  RPD_0480  succinate dehydrogenase, cytochrome b subunit  41.18 
 
 
140 aa  103  5e-22  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.74591 
 
 
-
 
NC_010725  Mpop_4277  succinate dehydrogenase, hydrophobic membrane anchor protein  43.55 
 
 
139 aa  103  6e-22  Methylobacterium populi BJ001  Bacteria  normal  0.692368  normal  0.965438 
 
 
-
 
NC_011757  Mchl_3893  succinate dehydrogenase, hydrophobic membrane anchor protein  44.35 
 
 
139 aa  103  6e-22  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.20647  normal 
 
 
-
 
NC_010511  M446_6039  succinate dehydrogenase, hydrophobic membrane anchor protein  45.08 
 
 
137 aa  101  4e-21  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0685536 
 
 
-
 
NC_011894  Mnod_7245  succinate dehydrogenase, hydrophobic membrane anchor protein  43.44 
 
 
137 aa  98.6  3e-20  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.396127  n/a   
 
 
-
 
NC_009485  BBta_0229  succinate dehydrogenase subunit D  45.53 
 
 
124 aa  98.6  3e-20  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0481798  normal 
 
 
-
 
NC_011666  Msil_3564  succinate dehydrogenase, hydrophobic membrane anchor protein  39.5 
 
 
129 aa  87.8  5e-17  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_002977  MCA1549  succinate dehydrogenase, hydrophobic membrane anchor protein, putative  40.32 
 
 
126 aa  87.4  6e-17  Methylococcus capsulatus str. Bath  Bacteria  normal  0.591464  n/a   
 
 
-
 
NC_008789  Hhal_0045  succinate dehydrogenase, cytochrome b subunit  39.02 
 
 
127 aa  85.5  2e-16  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1333  succinate dehydrogenase subunit D  38.4 
 
 
126 aa  84  6e-16  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.934114 
 
 
-
 
NC_008783  BARBAKC583_0089  succinate dehydrogenase, hydrophobic membrane anchor protein  32.8 
 
 
128 aa  84  7e-16  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_2847  succinate dehydrogenase subunit D  40.94 
 
 
123 aa  83.6  8e-16  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1536  succinate dehydrogenase, hydrophobic membrane anchor protein  43.52 
 
 
128 aa  79.7  0.00000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_00603  succinate dehydrogenase, hydrophobic membrane anchor protein  39.84 
 
 
128 aa  79  0.00000000000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_2108  succinate dehydrogenase, hydrophobic membrane anchor protein  36.84 
 
 
140 aa  78.6  0.00000000000003  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_010577  XfasM23_0343  succinate dehydrogenase, hydrophobic membrane anchor protein  38.76 
 
 
127 aa  75.5  0.0000000000002  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_1311  succinate dehydrogenase subunit D  34.43 
 
 
129 aa  75.1  0.0000000000003  Sphingomonas wittichii RW1  Bacteria  normal  0.0693068  normal 
 
 
-
 
NC_010513  Xfasm12_0379  succinate dehydrogenase hydrophobic membrane anchor subunit  37.98 
 
 
127 aa  73.6  0.000000000001  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1203  succinate dehydrogenase subunit D  35.16 
 
 
128 aa  73.6  0.000000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.767553  n/a   
 
 
-
 
NC_010505  Mrad2831_0458  succinate dehydrogenase, hydrophobic membrane anchor protein  44.8 
 
 
139 aa  72  0.000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.152846  normal 
 
 
-
 
NC_012853  Rleg_5819  succinate dehydrogenase, hydrophobic membrane anchor protein  32.79 
 
 
127 aa  71.6  0.000000000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_4839  succinate dehydrogenase, hydrophobic membrane anchor protein  35.38 
 
 
135 aa  70.1  0.000000000009  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_012853  Rleg_5889  succinate dehydrogenase, hydrophobic membrane anchor protein  33.07 
 
 
127 aa  68.9  0.00000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_0810  succinate dehydrogenase subunit D  35.54 
 
 
123 aa  68.9  0.00000000002  Jannaschia sp. CCS1  Bacteria  normal  normal  0.851404 
 
 
-
 
NC_008048  Sala_3031  succinate dehydrogenase, cytochrome b subunit  30.25 
 
 
134 aa  68.6  0.00000000003  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_2866  hypothetical protein  36.13 
 
 
123 aa  66.6  0.0000000001  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_1745  succinate dehydrogenase subunit D  32.79 
 
 
127 aa  63.5  0.0000000009  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.287201  n/a   
 
 
-
 
NC_009484  Acry_1880  succinate dehydrogenase, cytochrome b subunit  37.7 
 
 
125 aa  63.2  0.000000001  Acidiphilium cryptum JF-5  Bacteria  normal  0.519683  n/a   
 
 
-
 
NC_008687  Pden_3020  succinate dehydrogenase, cytochrome b subunit  37.21 
 
 
127 aa  57  0.00000009  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.915417 
 
 
-
 
NC_008686  Pden_0568  putative succinate dehydrogenase, hydrophobic membrane anchor protein  26.23 
 
 
129 aa  55.8  0.0000002  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.0825505 
 
 
-
 
NC_011138  MADE_01872  putative succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with sdhC  32.11 
 
 
115 aa  47.8  0.00006  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0117234  n/a   
 
 
-
 
NC_007484  Noc_2472  succinate dehydrogenase, hydrophobic membrane anchor protein  35.14 
 
 
105 aa  47.4  0.00007  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_4192  succinate dehydrogenase, hydrophobic membrane anchor protein  32.89 
 
 
122 aa  43.1  0.001  Pseudomonas putida KT2440  Bacteria  normal  0.678645  normal 
 
 
-
 
NC_008228  Patl_1796  putative succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhC  24.69 
 
 
115 aa  43.1  0.001  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.0000019706  n/a   
 
 
-
 
NC_010501  PputW619_3515  succinate dehydrogenase, hydrophobic membrane anchor protein  32.89 
 
 
122 aa  43.1  0.001  Pseudomonas putida W619  Bacteria  normal  0.467691  normal 
 
 
-
 
NC_010322  PputGB1_3763  succinate dehydrogenase, hydrophobic membrane anchor protein  32.89 
 
 
122 aa  43.1  0.001  Pseudomonas putida GB-1  Bacteria  normal  0.36414  normal 
 
 
-
 
NC_009512  Pput_1662  succinate dehydrogenase, hydrophobic membrane anchor protein  32.89 
 
 
122 aa  43.1  0.001  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2506  succinate dehydrogenase subunit D  30.26 
 
 
122 aa  42.4  0.002  Pseudomonas mendocina ymp  Bacteria  normal  0.944522  normal  0.300404 
 
 
-
 
NC_009049  Rsph17029_2635  putative succinate dehydrogenase, hydrophobic membrane anchor protein  28.57 
 
 
123 aa  41.6  0.004  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0975  succinate dehydrogenase subunit D  28.57 
 
 
123 aa  41.6  0.004  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0087  hypothetical protein  28.57 
 
 
123 aa  41.2  0.004  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.5065  normal 
 
 
-
 
NC_008752  Aave_2203  succinate dehydrogenase subunit D  35.11 
 
 
121 aa  41.2  0.005  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.929187 
 
 
-
 
NC_007912  Sde_2109  succinate dehydrogenase subunit D  30.26 
 
 
122 aa  40.4  0.007  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.0000269822  normal 
 
 
-
 
NC_007963  Csal_1214  succinate dehydrogenase subunit D  26.83 
 
 
115 aa  40  0.01  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.34684  n/a   
 
 
-
 
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