76 homologs were found in PanDaTox collection
for query gene Nham_2399 on replicon NC_007964
Organism: Nitrobacter hamburgensis X14



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007964  Nham_2399  hypothetical protein  100 
 
 
111 aa  229  1e-59  Nitrobacter hamburgensis X14  Bacteria  normal  0.406444  n/a   
 
 
-
 
NC_013124  Afer_1025  ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent  41.89 
 
 
1331 aa  63.5  0.0000000009  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.400039  n/a   
 
 
-
 
NC_011894  Mnod_4229  hypothetical protein  34.31 
 
 
136 aa  61.6  0.000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_4112  hypothetical protein  35.64 
 
 
127 aa  61.2  0.000000005  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_1124  vitamin B12-dependent ribonucleotide reductase  43.06 
 
 
1004 aa  60.8  0.000000006  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0740505  unclonable  0.0000199078 
 
 
-
 
NC_007802  Jann_2472  ribonucleotide-diphosphate reductase subunit alpha  38.96 
 
 
1236 aa  59.7  0.00000001  Jannaschia sp. CCS1  Bacteria  normal  normal  0.0474976 
 
 
-
 
NC_009952  Dshi_1785  ribonucleotide-diphosphate reductase subunit alpha  33.64 
 
 
1224 aa  59.7  0.00000001  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.395663  normal 
 
 
-
 
NC_010580  Bind_3744  hypothetical protein  29.29 
 
 
120 aa  59.7  0.00000001  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_5426  ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent  37.18 
 
 
963 aa  58.9  0.00000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.675495  normal 
 
 
-
 
NC_013757  Gobs_3898  ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent  40.85 
 
 
951 aa  58.5  0.00000003  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2198  vitamin B12-dependent ribonucleotide reductase  39.19 
 
 
929 aa  58.9  0.00000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.146649 
 
 
-
 
NC_008686  Pden_1384  ribonucleotide-diphosphate reductase subunit alpha  38.96 
 
 
1205 aa  58.2  0.00000004  Paracoccus denitrificans PD1222  Bacteria  normal  0.034072  normal  0.508089 
 
 
-
 
NC_008044  TM1040_1151  ribonucleotide-diphosphate reductase subunit alpha  38.96 
 
 
1217 aa  57.8  0.00000005  Ruegeria sp. TM1040  Bacteria  normal  0.0210759  normal  0.34351 
 
 
-
 
NC_014210  Ndas_3326  ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent  33.64 
 
 
1779 aa  57.4  0.00000006  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_1162  ribonucleotide-diphosphate reductase subunit alpha  32.71 
 
 
1218 aa  57.4  0.00000006  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.897146  normal 
 
 
-
 
NC_009428  Rsph17025_0933  ribonucleotide-diphosphate reductase subunit alpha  32.41 
 
 
1239 aa  57.8  0.00000006  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0421297  normal 
 
 
-
 
NC_007493  RSP_2495  ribonucleotide-diphosphate reductase subunit alpha  32.71 
 
 
1218 aa  57.4  0.00000006  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1613  vitamin B12-dependent ribonucleotide reductase  39.19 
 
 
925 aa  57  0.00000008  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1476  vitamin B12-dependent ribonucleotide reductase  40 
 
 
1098 aa  57  0.00000008  Acidothermus cellulolyticus 11B  Bacteria  decreased coverage  0.00514202  normal 
 
 
-
 
NC_011145  AnaeK_2247  vitamin B12-dependent ribonucleotide reductase  39.19 
 
 
925 aa  56.6  0.0000001  Anaeromyxobacter sp. K  Bacteria  normal  0.22308  n/a   
 
 
-
 
NC_011891  A2cp1_2335  vitamin B12-dependent ribonucleotide reductase  39.19 
 
 
928 aa  56.6  0.0000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_5520  ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent  38.89 
 
 
963 aa  56.2  0.0000002  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2149  vitamin B12-dependent ribonucleotide reductase  38.03 
 
 
934 aa  55.8  0.0000002  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_1453  vitamin B12-dependent ribonucleotide reductase  38.03 
 
 
963 aa  54.7  0.0000004  Salinispora tropica CNB-440  Bacteria  normal  normal  0.745934 
 
 
-
 
NC_009953  Sare_1411  vitamin B12-dependent ribonucleotide reductase  38.03 
 
 
962 aa  55.1  0.0000004  Salinispora arenicola CNS-205  Bacteria  normal  0.0560908  decreased coverage  0.00000497983 
 
 
-
 
NC_009719  Plav_3299  ribonucleotide-diphosphate reductase subunit alpha  36.36 
 
 
1244 aa  54.3  0.0000005  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.0441324  normal  0.905318 
 
 
-
 
NC_013169  Ksed_17170  vitamin B12-dependent ribonucleotide reductase  35.06 
 
 
985 aa  54.7  0.0000005  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_1413  ribonucleotide-diphosphate reductase subunit alpha  31.78 
 
 
1271 aa  54.3  0.0000006  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.114125  normal  0.496027 
 
 
-
 
NC_008254  Meso_1332  ribonucleotide-diphosphate reductase subunit alpha  29.57 
 
 
1258 aa  53.9  0.0000007  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_4674  ribonucleotide-diphosphate reductase subunit alpha  37.14 
 
 
1241 aa  53.9  0.0000008  Xanthobacter autotrophicus Py2  Bacteria  normal  0.411402  normal  0.22515 
 
 
-
 
NC_010725  Mpop_1037  ribonucleotide-diphosphate reductase subunit alpha  29.03 
 
 
1243 aa  53.5  0.0000009  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_0303  ribonucleotide-diphosphate reductase subunit alpha  35.9 
 
 
1243 aa  53.5  0.0000009  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_3976  vitamin B12-dependent ribonucleotide reductase  36.62 
 
 
988 aa  53.5  0.000001  Nakamurella multipartita DSM 44233  Bacteria  normal  0.629167  normal  0.0657242 
 
 
-
 
NC_007406  Nwi_1571  ribonucleotide-diphosphate reductase subunit alpha  36.99 
 
 
1265 aa  53.5  0.000001  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1231  ribonucleotide-diphosphate reductase subunit alpha  29.03 
 
 
1243 aa  53.5  0.000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0295  ribonucleotide-diphosphate reductase subunit alpha  36.62 
 
 
1247 aa  53.1  0.000001  Methylobacterium sp. 4-46  Bacteria  normal  decreased coverage  0.00235826 
 
 
-
 
NC_011894  Mnod_6038  ribonucleotide-diphosphate reductase subunit alpha  36.62 
 
 
1243 aa  53.1  0.000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.482275  n/a   
 
 
-
 
NC_010172  Mext_1102  ribonucleotide-diphosphate reductase subunit alpha  29.03 
 
 
1243 aa  53.5  0.000001  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1589  ribonucleotide-diphosphate reductase subunit alpha  31.78 
 
 
1271 aa  53.1  0.000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.872862 
 
 
-
 
NC_009485  BBta_4237  ribonucleotide-diphosphate reductase subunit alpha  36.99 
 
 
1258 aa  52.8  0.000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.284316  normal  0.211473 
 
 
-
 
NC_009636  Smed_1233  ribonucleotide-diphosphate reductase subunit alpha  30.84 
 
 
1263 aa  53.1  0.000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.521746  normal  0.0561989 
 
 
-
 
NC_013501  Rmar_2540  ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent  35.9 
 
 
1354 aa  52.8  0.000002  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR1043  ribonucleotide-diphosphate reductase subunit alpha  36.36 
 
 
1264 aa  52.4  0.000002  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_2544  ribonucleotide-diphosphate reductase subunit alpha  36.99 
 
 
1257 aa  52.8  0.000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.944514  normal 
 
 
-
 
NC_007925  RPC_2380  ribonucleotide-diphosphate reductase subunit alpha  36.99 
 
 
1262 aa  52.8  0.000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2441  ribonucleotide-diphosphate reductase subunit alpha  36.36 
 
 
1231 aa  52  0.000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_2912  ribonucleotide-diphosphate reductase subunit alpha  36.99 
 
 
1256 aa  52.8  0.000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.824334  normal  0.16669 
 
 
-
 
NC_009505  BOV_1008  ribonucleotide-diphosphate reductase subunit alpha  36.36 
 
 
1264 aa  52.4  0.000002  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3325  ribonucleotide-diphosphate reductase subunit alpha  36.99 
 
 
1257 aa  52.8  0.000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_2084  ribonucleotide-diphosphate reductase subunit alpha  38.57 
 
 
1263 aa  52.8  0.000002  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_1235  vitamin B12-dependent ribonucleotide reductase  37.14 
 
 
1011 aa  51.6  0.000004  Frankia sp. EAN1pec  Bacteria  normal  hitchhiker  0.00432808 
 
 
-
 
NC_007777  Francci3_3507  ribonucleoside diphosphate reductase, B12-dependent  37.14 
 
 
1281 aa  50.8  0.000006  Frankia sp. CcI3  Bacteria  normal  normal  0.127912 
 
 
-
 
NC_011989  Avi_2599  ribonucleotide-diphosphate reductase subunit alpha  35.71 
 
 
1256 aa  50.8  0.000006  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_2131  ribonucleotide-diphosphate reductase subunit alpha  35.06 
 
 
1263 aa  50.1  0.000009  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_3811  vitamin B12-dependent ribonucleotide reductase  34.72 
 
 
956 aa  50.1  0.00001  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_1955  ribonucleotide-diphosphate reductase subunit alpha  35.71 
 
 
1236 aa  50.1  0.00001  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.226018  normal 
 
 
-
 
NC_008347  Mmar10_1261  ribonucleotide reductase-related protein  34.29 
 
 
978 aa  48.9  0.00002  Maricaulis maris MCS10  Bacteria  normal  0.905113  hitchhiker  0.00163098 
 
 
-
 
NC_013947  Snas_4560  ribonucleoside-diphosphate reductase adenosylcobalamin-dependent  35.71 
 
 
946 aa  49.7  0.00002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.847237  normal 
 
 
-
 
NC_007514  Cag_0703  ribonucleotide-diphosphate reductase subunit alpha  36.11 
 
 
1513 aa  48.9  0.00002  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_2560  ribonucleotide reductase-related protein  33.8 
 
 
918 aa  49.3  0.00002  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_1431  vitamin B12-dependent ribonucleotide reductase  32.86 
 
 
948 aa  48.5  0.00003  Actinosynnema mirum DSM 43827  Bacteria  normal  0.154618  n/a   
 
 
-
 
NC_011059  Paes_0716  ribonucleotide-diphosphate reductase subunit alpha  37.5 
 
 
1156 aa  48.9  0.00003  Prosthecochloris aestuarii DSM 271  Bacteria  decreased coverage  0.00503093  normal 
 
 
-
 
NC_011060  Ppha_0876  ribonucleotide-diphosphate reductase subunit alpha  37.5 
 
 
1141 aa  48.5  0.00003  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.0369071  n/a   
 
 
-
 
NC_013595  Sros_7129  Ribonucleoside-diphosphate reductase  34.72 
 
 
945 aa  48.5  0.00003  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_0539  ribonucleotide-diphosphate reductase subunit alpha  37.5 
 
 
1146 aa  48.9  0.00003  Chlorobium limicola DSM 245  Bacteria  normal  0.413657  n/a   
 
 
-
 
NC_011666  Msil_0184  ribonucleotide-diphosphate reductase subunit alpha  28.57 
 
 
1230 aa  48.1  0.00004  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_013510  Tcur_1586  ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent  30 
 
 
1370 aa  48.1  0.00004  Thermomonospora curvata DSM 43183  Bacteria  normal  0.945292  n/a   
 
 
-
 
NC_007512  Plut_0577  ribonucleotide-diphosphate reductase subunit alpha  37.5 
 
 
1521 aa  48.1  0.00004  Chlorobium luteolum DSM 273  Bacteria  normal  normal  0.288814 
 
 
-
 
NC_010831  Cphamn1_0800  ribonucleotide-diphosphate reductase subunit alpha  36.11 
 
 
1161 aa  47.8  0.00005  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_008639  Cpha266_1782  ribonucleotide-diphosphate reductase subunit alpha  36.11 
 
 
1148 aa  47.8  0.00005  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.360896  n/a   
 
 
-
 
NC_014148  Plim_3177  ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent  32.47 
 
 
1032 aa  47.4  0.00006  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_0169  hypothetical protein  34.29 
 
 
508 aa  46.2  0.0001  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_27570  vitamin B12-dependent ribonucleotide reductase  33.8 
 
 
955 aa  46.2  0.0001  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.368916  normal 
 
 
-
 
NC_014165  Tbis_2425  ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent  33.8 
 
 
938 aa  46.6  0.0001  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_010655  Amuc_1970  ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent  37.5 
 
 
1180 aa  42.7  0.002  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  0.23883  decreased coverage  0.000751585 
 
 
-
 
NC_013131  Caci_1817  vitamin B12-dependent ribonucleotide reductase  32.39 
 
 
994 aa  41.6  0.004  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0780054  normal 
 
 
-
 
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