Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Clim_0539 |
Symbol | |
ID | 6354890 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium limicola DSM 245 |
Kingdom | Bacteria |
Replicon accession | NC_010803 |
Strand | + |
Start bp | 606817 |
End bp | 610257 |
Gene Length | 3441 bp |
Protein Length | 1146 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642668175 |
Product | ribonucleotide-diphosphate reductase subunit alpha |
Protein accession | YP_001942610 |
Protein GI | 189346081 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
TIGRFAM ID | [TIGR02504] ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.413657 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTACCT CTCCTGGAGA GAATGTCTAT GACCGTTTCG AGTATACCCT CCGTTCATCC GTGCTGCGCA ATACCGATGG CTCGAAGGTG TTTGAGATGA ACGATATCGA AGTGCCGAAA CACTGGTCGC AGGTTGCTGC CGATATTCTT GCCCAGAAAT ATTTTCGCAA GACAGGGGTT CCCAGGCGCG ATGCGGAAGG CAAGGTACTG CTCGATGAAC ATGGCCGCCC GGTAACCGGC AGTGAACGCT CCATCAAGGA GGTGGTGCAT CGTTTGGCAG GGTGCTGGAG GGAGTGGGGC GAAAACAACC GCTACTTCGA CACTCCTGAC GACGCCCGGG CCTTTTACGA TGAGGTCGCA TACATGCTGC TTCGTCAGAT GGGTGCTCCG AACTCGCCGC AATGGTTTAA CACCGGACTG AACTTCGCTT ACGGTATTGA CGGTCCCGCC CAGGGGCATT TCTATGTAGA TCCGGCAACA CAGGAGGTGC GTGAGTCTGA AGACGCTTAT TCCCGTCCGC AGGCACACGC CTGTTTCATT CAGTCGGTCA ATGACGATCT GGTCAACGAA GGCGGCATAT TTGATCTTGC CGTTCGCGAA GCAAGGGTTT TCAAGTTCGG CAGCGGATCG GGCACAAACT ATTCGAATCT TCGGTCATCC GGTGAAAAAC TCAGCGGTGG CGGGAGTTCA TCGGGATTGA TGAGTTTTCT CAAAATTTTC GATTCGGCGG CAGGAGCCAT CAAATCGGGA GGAACGACTC GCCGTGCCGC TAAAATGGTT ATTGTCGATA TCGATCATCC GGACGTCGAG AGATTTATCG AGTGGAAAGC ACGGGAAGAG GACAAGGTTG CCGCGCTGGT CGCCGGTTCG AGAATCTGTT CCCGCTTTCT GAAAGCTATT GTCGATGAAG CCATTGCCAA CGGTTCCGAT CGTTCCGAAA ATCTGAACCT CCAGCTGCTC ATCAAAAATG CCCTTGCCAG AGCCGTGCCC ATGAATTATA TCGTCAGGGT GCTTGCCCTG GTCGATCAGG GCTATACCAC GCTTGACTTC GAAGAGTATG ATACCCATTA CGAATCCGAA GCGTACCAGA CTGTCGGCGG CCAGAATTCG AACAATACGG TCAGGGTCAC CAACGCCTTC ATGAAAGCGG TCGAGAACGA CGACATGTGG GCGCTTCGCG AGCGTACCAC CGATAAAACG GCAAGGGCGG TAAGAGCTCG CGATCTCTGG GAAAAAGTTC TCATGAGCGC ATGGAAGTGC GCCGATCCCG GTCTCCAGTT CGACACCACC ATCAACGAGT GGCACACCTG TCCGCAGAGC GGAAGGATCA ACGCCAGCAA CCCCTGCAGC GAGTACATGT TCCTCGACGA CACCGCCTGT AATCTGGCCA GCCTCAACCT GATTCACTTC GTCGATGAAT CGACCGGAAA GATCAGGGTC AGGGAGCTGC TGCACGCTTC GGCGCTCTGG ACCGTGGTGC TGGAGATATC GGTGCTGATG GCGCATTTCC CATCGAAGGA TATCGCCCGC CTCAGCTACG AGTACCGCAC GCTCGGTCTT GGCTTTGCCA ATCTCGGCAC GGTGCTTATG GTGCTCGGCA TTCCTTACGA TTCGCCAAAA GCACTTGCGC TTGCCGGTGC GATTTCAGCG CTTATGACCG GTCAGGCTTA TGTCACCTCT GCGGAAATGG CAAAAGACCT CGGCGCGTTT GCCGGCTATG CGGCCAACTC CAAAGATATG CTGCGTGTGA TCCGCAACCA TCGTCGTGCG GCCCATAATC TTTCCGAAGA GGAGTACGAA GGACTTAGCG TCAAGCCTCG CGGGATCGAC TCGGAATACT GTCCGACAGA GCTTTTTGAA GCTGCCGGAA AAATCTGGGA CGAGGCTCTG CAGAAGGGCA AGAAACACGG GTTTCGCAAC GCGCAGGTCA GCGTTATCGC TCCTACCGGC ACCATCGGTC TCGTTATGGA CTGCGACACT ACCGGCGTCG AACCTGAATT CGCCATTGTC AAGTTCAAGA AACTTGCCGG AGGCGGCTAT TTCAAAATCG TCAACCAGTC GGTGCACAAA GCGCTTGAAA GGCTTGGCTA TACCAGTGCA CAGATAGACG ATATCGAAAA GTACTGCAAG GGTCACGGAA CGCTTTCCGG ATGCCCGACC ATCAGCCGCC AGTGGCTGAA GAGCAGGGGA TTCACCGACG AGAAGATCGA GCAGGTCGAG TTGCAGCTTG AAACCGTTTT CGATATCCGG TTCGCTTTCA ATAAATGGAT TCTCGGTGAG GAGTTCTGTC TTTCGCTGGG CTTTACCGAT GAACAGCTCA ACAGCCCTGA TTTCGATATG CTGCAGGCGC TCGGAGCTAC CGGTCAGGAT GCCGAAGCCG CCAATGACTA CATCTGCGGC ACCATGACCA TCGAAGGTGC GCCTCATCTG AAGCATGAAC ACCTGCCGGT GTTCGATTGC GCAAGCCGCT GCGGCAAAAA AGGTGAACGA TATATCACGC ATATGGCACA TGTCCATATG ATGTCCGCCG TCCAACCGTT TATTTCGGGT GCGATTTCGA AAACCGTCAA TATGCCCGGA ACGGCTACAA CAGTTGAAAT AGGGGATGTA TATCGCTCCG CCTGGCAGCA CATGGTCAAG GCGATAACCA TCTATCGTGA CGGATCGAAA CTGTCGCAGC CGCTCAATAT TTCAAGCTAC AGGGATCTTG ACGAGATCAT CATGCTCGGC ACCGAGGAGA CGCTCGACGA AACGAAAGGA CCTCGAGAGG TTCAGGAGCG CATTATCGAA CGGGTTTTTC ACCGTTCCGA GCGCAGACTT CTTCCGAAAA GACGCAAGGG GTATATCCGT GAAGCCTATG TGGGAGGACA CAAGGTGTTT CTTCGTACCG GAGAGTATGA AGATGGATCG CTCGGAGAGG TTTTTATTGA TATGTACAAA GAGGGGGCTT CCTTCAAGGG ACTGTTGAAC TGTTTTGCCG TGCTTGCCTC GAAAGCCCTG CAGTACGGCA TGCCGCTCGA GGAGCTTGTG GACAGCTTTA CCTTTACCCG CTTTGAGCCA GCCGGAACCG TGCAGGGTCA CAATGCCATC AAAAACTCCA CCTCGATTCT CGATTACGTG TTTCGTTCGA TCGGTTACGA CTATCTCGGC CGCAAGGATT TCGTCCATGT AAAGGCCGTC GATGAAGTTC CTGAGGGCGG AGATATTGAA GAAAAAGCAA AAAATAACGG TTCAGCCGTT CATGAACCGC AACTGTCGCA TGCTGCCGGA CAGCAGCATG TGACGTCGGA GTACGCAGCG AGTCTGAAAA CTCAGGTTTT GCAGGCCAAG GTTCAGGGTT ACACCGGGGA GCAGTGCGAA AACTGCGGTT CGATGCGGGT GAAGCAGAAC GGTACCTGCA AGGTTTGTGA GGATTGCGGG ACAACGACCG GTTGTTCCTG A
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Protein sequence | MFTSPGENVY DRFEYTLRSS VLRNTDGSKV FEMNDIEVPK HWSQVAADIL AQKYFRKTGV PRRDAEGKVL LDEHGRPVTG SERSIKEVVH RLAGCWREWG ENNRYFDTPD DARAFYDEVA YMLLRQMGAP NSPQWFNTGL NFAYGIDGPA QGHFYVDPAT QEVRESEDAY SRPQAHACFI QSVNDDLVNE GGIFDLAVRE ARVFKFGSGS GTNYSNLRSS GEKLSGGGSS SGLMSFLKIF DSAAGAIKSG GTTRRAAKMV IVDIDHPDVE RFIEWKAREE DKVAALVAGS RICSRFLKAI VDEAIANGSD RSENLNLQLL IKNALARAVP MNYIVRVLAL VDQGYTTLDF EEYDTHYESE AYQTVGGQNS NNTVRVTNAF MKAVENDDMW ALRERTTDKT ARAVRARDLW EKVLMSAWKC ADPGLQFDTT INEWHTCPQS GRINASNPCS EYMFLDDTAC NLASLNLIHF VDESTGKIRV RELLHASALW TVVLEISVLM AHFPSKDIAR LSYEYRTLGL GFANLGTVLM VLGIPYDSPK ALALAGAISA LMTGQAYVTS AEMAKDLGAF AGYAANSKDM LRVIRNHRRA AHNLSEEEYE GLSVKPRGID SEYCPTELFE AAGKIWDEAL QKGKKHGFRN AQVSVIAPTG TIGLVMDCDT TGVEPEFAIV KFKKLAGGGY FKIVNQSVHK ALERLGYTSA QIDDIEKYCK GHGTLSGCPT ISRQWLKSRG FTDEKIEQVE LQLETVFDIR FAFNKWILGE EFCLSLGFTD EQLNSPDFDM LQALGATGQD AEAANDYICG TMTIEGAPHL KHEHLPVFDC ASRCGKKGER YITHMAHVHM MSAVQPFISG AISKTVNMPG TATTVEIGDV YRSAWQHMVK AITIYRDGSK LSQPLNISSY RDLDEIIMLG TEETLDETKG PREVQERIIE RVFHRSERRL LPKRRKGYIR EAYVGGHKVF LRTGEYEDGS LGEVFIDMYK EGASFKGLLN CFAVLASKAL QYGMPLEELV DSFTFTRFEP AGTVQGHNAI KNSTSILDYV FRSIGYDYLG RKDFVHVKAV DEVPEGGDIE EKAKNNGSAV HEPQLSHAAG QQHVTSEYAA SLKTQVLQAK VQGYTGEQCE NCGSMRVKQN GTCKVCEDCG TTTGCS
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