| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1785 |
|---|
| Symbol | nrdJ |
|---|
| ID | 5713353 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1854290 |
|---|
| End bp | 1857964 |
|---|
| Gene Length | 3675 bp |
|---|
| Protein Length | 1224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641267704 |
|---|
| Product | ribonucleotide-diphosphate reductase subunit alpha |
|---|
| Protein accession | YP_001533128 |
|---|
| Protein GI | 159044334 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02504] ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.395663 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCG AACGCCATTT CACCAAAGAT GGAACTGACG CTTACGCCGG GATCGAGTTC
TCGATCACCG CGTCCGAAAT TCGCAACCCC GATGGTACCG TGGTGTTCCG GCTCGACGAG
GTCGAAGTGC CCAGCTCCTG GAGCCAGGTC GCCTCGGACG TGATCGCGCA GAAATACTTC
CGCAAGGCCG GCGTTCCCGC CGCCCTGAAG CCCGTGCGCG AAAAGGGCGT GCCGGAATTC
CTGTGGCGCT CGGTGGCAGA CGAGGCCGCG CTCGCCAAGC TGCCCGCAGA GAAACGCTAT
GGCGGCGAAA CCTCCGCCCG CCAGGTGTTC CGCCGTCTGG CAGGCGCCTG GGCCTATTGG
GGCTGGAAGG GGGGCTATTT CTCCACCGAG GCCGATGCCC GCACCTATTT CGACGAGATG
CAGCTGATGC TGGCGCGCCA GATGGCCGCG CCGAACAGCC CGCAATGGTT CAACACCGGC
CTGCACTGGG CCTACGGCAT CGACGGTCCC GCGCAGGGCC ACTACTACGT GGATCACAAG
TCCGGCAAAC TGACCAAATC CACATCGTCC TACGAGCACC CGCAGCCCCA TGCCTGCTTC
ATCCAGTCCG TCGCCGACGA CCTGGTGAAT GATGGCGGCA TCATGGACCT GTGGGTCCGC
GAGGCGCGGC TTTTCAAATA CGGCTCCGGC ACCGGCACGA ATTTCTCCTC CCTTCGTGCC
GAAGGAGAGG CTCTGTCAGG CGGGGGTAAG TCCTCCGGCC TGATGGGGTT CCTCAAGATC
GGAGACCGGG CCGCAGGGGC CATCAAGTCC GGTGGCACCA CACGCCGGGC AGCGAAGATG
GTGATCTGCG ACGCCGATCA CCCCGATATC GAGGAATTCG TGAACTGGAA GGTGAAGGAG
GAGCAGAAGG TCGCCTCCCT CGTCGCCGGC TCGAAAATGC ACGAGGCCAA GCTGAACGAG
ATTTTCGCCG CGATCGGCGA ATGGGACGGG CTGGGCGAGG ACGCGGTGGA CCCCACCAAG
AACGCTGCGC TGAAATCCGC GATCCGGGCC GCCAAGAAGG TGCAGATCCC CGAGACCTAC
ATCAAGCGGG TGCTGGATTA CGCCAAGCAG GGCTATGCCT CCATCGAGTT TCCGACCTAT
GATACCGACT GGGATTCCGA GGCGTATAAC TCGGTCTCCG GGCAGAACTC CAACAACTCC
GTGCGCGTGA CCGACGCCTT CCTGAAGGCC GTCAAAGACG ACGCGGATTG GGAGCTGATC
CGCCGCACCG ACGGCAAGGT CGCCAAGACC ATCAAGGCGC GCGAGCTGTG GGAAACCATC
GGCCACGCGG CCTGGGCCTG CGCCGATCCC GGCATCCAGT TCCACGACAC CGTCAACGAC
TGGCACACCT GCCCCGAGGA TGGCGCGATC CGCGGCTCCA ACCCGTGCTC GGAATACATG
TTCCTTGACG ATACCGCCTG CAACCTGGCG TCGATGAACC TGCTGACCTT CTACCGCGAC
GGCAAGTTCG ACAGCGAAGG CTACATGCAC GCGGCGCGGC TCTGGACCCT GACCCTGGAA
ATCTCGGTGC TCATGGCGCA GTTCCCGTCC AAGGAAATCG CGCAGCGCTC CTACGACTTC
CGCACCCTCG GTCTCGGCTA TGCCAATATC GGCGGGCTGC TGATGAACAT GGGCTACGGC
TATGACAGCG ACGAAGGAAG GGCGCTCTGC GGGGCGCTGA CCGCGATCAT GACCGGGGTG
AGCTATGCCA CCTCCGCCGA GATCGCTGCA GAGGTCGGGC CGTTCCCGGG TTATGCCAAG
AACGCCGATC ACATGCTCCG CGTGATCCGC AACCACCGCA ACGCGGCCTA TGGCAAGACC
GACGGCTACG AGGCGCTCGC GACGAAACCC GTCGCGCTGG ACCATGCCAA CTGCCCGGAC
CAGACGCTGG TGAAACTCGC CATGTCCTCC TGGGATGAGG CGCTGAAGCT GGGCGAGCAG
CACGGGTATC GCAATGCGCA AGCCACGGTG ATCGCACCCA CGGGCACCAT CGGTCTGGTA
ATGGATTGCG ACACCACCGG CATCGAGCCG GACTTCGCCC TGGTGAAGTT CAAGAAGCTC
GCGGGCGGCG GCTACTTCAA GATCATCAAC CGCTCGGTCC CCGCGGCGCT GGACACGCTG
GGCTACAGCT CGGCCCAGAT CGAAGAGATC ATCGCCTATG CGGTTGGCCA CGGCACGCTC
GGCAATGCGC CCGGCGTGAA CCACACCGCC CTGATCGGCC ACGGCTTCGG GCCTGAGCAG
ATCGAGAAGA TCGAGGCGGC GCTGCCTTCG GCCTTCGACA TCCGGTTCGT GTTCAACCAG
TGGACCCTGG GCGAGGCGTT CTGCACCGAG GTGCTGGGCA TTCCCGCGGC GAAACTGAAC
GATCCGACCT TCGACATGCT GCGGCACCTG GGTTTCGCGA AGAAAGACAT CGATCTGGCC
AACGATCATG TCTGCGGGAC CATGACGCTG GAGGGCGCGC CCTTCCTGAA AGCCGAACAC
TACTCGGTCT TCGACTGCGC CAACCCCTGC GGCAAGCGCG GCAAGCGGTT CCTGTCGGTG
GACAGCCACA TTCACATGAT GGCCGCGGCG CAGAGCTTCA TCTCGGGCGC GATCTCGAAG
ACGATCAACA TGCCCAACGA TGCCACGATC GAGGATTGCC AGAAGGCCTA TGAGCTGAGC
TGGTCGCTGG GCACCAAGGC CAACGCGCTC TACCGCGACG GCTCCAAACT CAGCCAGCCG
CTCGCTGCGG CCCTTGTGGA GGATGACGAG GAGGCCGCGG AGGTTCTGGA AACCGGCTCC
ACCATGGAAA AGGCCCAGGT CATCGCCGAG AAGATCGTCG AGAAGGTGGT CATCAAGGAG
GTCATCAAGG CCCACCGCGA AAAGCTGCCC GAGCGGCGCA AGGGTTATAC CCAGAAGGCC
ATCGTGGGCG GACACAAGGT TTATCTGCGC ACGGGCGAGT ATGCCGACGG CAACCTCGGC
GAGATCTTCA TCGACATGCA CAAGGAAGGC GCGGGCTTCC GGGCGATGAT GAACAACTTC
GCCATCGCGG TCTCGGTCGG CCTGCAATAC GGCGTGCCGC TGGAGGAGTT CGTGGATGCC
TTCACCTTCA CCAAGTTCGA GCCCGCGGGC ATGGTGCAGG GCAATGACAG CATCAAGAAC
GCCACCTCGA TCCTGGATTA CATCTTCCGC GAGCTGGCGG TGAGCTATCT CGACCGCACG
GATCTGGCCC ATGTGGCGCC CCAGGGCGCG ACCTTCGACG ATATCGGCCG GGGCGAGGAA
GAGGGGGTCT CCAACGTCAA GGAGATGTCC GACAGTGCGG CCAGCAAGTC GCTGGAGGTG
CTCAAGCAGA TCAGCTCGAC CGGGTATCTG CGCAAGCGGA TGCCGCAGGA GTTGGTGGTG
CTGCAGGGCG GGGGCAAGCC GGTGACGGCG GAGATCCCGG TCGTCGGCAC GATCGGTGGC
GGCGAGGTGG CGACGATGAC CGCGCTTCGC AGCGAAACGA CCGTGGCCAC GACGACGTCG
ATCGACCCGC GCGCCAAGGC CAAGATGCAG GGCTACGAGG GCGAGGCCTG CGGCGAGTGC
GGCAACTACA CGCTGGTGCG CAACGGCACC TGCATGAAGT GCAACACCTG CGGGGGTACG
TCGGGATGCA GCTAG
|
|---|
| Protein sequence | MKIERHFTKD GTDAYAGIEF SITASEIRNP DGTVVFRLDE VEVPSSWSQV ASDVIAQKYF
RKAGVPAALK PVREKGVPEF LWRSVADEAA LAKLPAEKRY GGETSARQVF RRLAGAWAYW
GWKGGYFSTE ADARTYFDEM QLMLARQMAA PNSPQWFNTG LHWAYGIDGP AQGHYYVDHK
SGKLTKSTSS YEHPQPHACF IQSVADDLVN DGGIMDLWVR EARLFKYGSG TGTNFSSLRA
EGEALSGGGK SSGLMGFLKI GDRAAGAIKS GGTTRRAAKM VICDADHPDI EEFVNWKVKE
EQKVASLVAG SKMHEAKLNE IFAAIGEWDG LGEDAVDPTK NAALKSAIRA AKKVQIPETY
IKRVLDYAKQ GYASIEFPTY DTDWDSEAYN SVSGQNSNNS VRVTDAFLKA VKDDADWELI
RRTDGKVAKT IKARELWETI GHAAWACADP GIQFHDTVND WHTCPEDGAI RGSNPCSEYM
FLDDTACNLA SMNLLTFYRD GKFDSEGYMH AARLWTLTLE ISVLMAQFPS KEIAQRSYDF
RTLGLGYANI GGLLMNMGYG YDSDEGRALC GALTAIMTGV SYATSAEIAA EVGPFPGYAK
NADHMLRVIR NHRNAAYGKT DGYEALATKP VALDHANCPD QTLVKLAMSS WDEALKLGEQ
HGYRNAQATV IAPTGTIGLV MDCDTTGIEP DFALVKFKKL AGGGYFKIIN RSVPAALDTL
GYSSAQIEEI IAYAVGHGTL GNAPGVNHTA LIGHGFGPEQ IEKIEAALPS AFDIRFVFNQ
WTLGEAFCTE VLGIPAAKLN DPTFDMLRHL GFAKKDIDLA NDHVCGTMTL EGAPFLKAEH
YSVFDCANPC GKRGKRFLSV DSHIHMMAAA QSFISGAISK TINMPNDATI EDCQKAYELS
WSLGTKANAL YRDGSKLSQP LAAALVEDDE EAAEVLETGS TMEKAQVIAE KIVEKVVIKE
VIKAHREKLP ERRKGYTQKA IVGGHKVYLR TGEYADGNLG EIFIDMHKEG AGFRAMMNNF
AIAVSVGLQY GVPLEEFVDA FTFTKFEPAG MVQGNDSIKN ATSILDYIFR ELAVSYLDRT
DLAHVAPQGA TFDDIGRGEE EGVSNVKEMS DSAASKSLEV LKQISSTGYL RKRMPQELVV
LQGGGKPVTA EIPVVGTIGG GEVATMTALR SETTVATTTS IDPRAKAKMQ GYEGEACGEC
GNYTLVRNGT CMKCNTCGGT SGCS
|
|---|
| |