Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1785 |
Symbol | nrdJ |
ID | 5713353 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 1854290 |
End bp | 1857964 |
Gene Length | 3675 bp |
Protein Length | 1224 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641267704 |
Product | ribonucleotide-diphosphate reductase subunit alpha |
Protein accession | YP_001533128 |
Protein GI | 159044334 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
TIGRFAM ID | [TIGR02504] ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.395663 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAATCG AACGCCATTT CACCAAAGAT GGAACTGACG CTTACGCCGG GATCGAGTTC TCGATCACCG CGTCCGAAAT TCGCAACCCC GATGGTACCG TGGTGTTCCG GCTCGACGAG GTCGAAGTGC CCAGCTCCTG GAGCCAGGTC GCCTCGGACG TGATCGCGCA GAAATACTTC CGCAAGGCCG GCGTTCCCGC CGCCCTGAAG CCCGTGCGCG AAAAGGGCGT GCCGGAATTC CTGTGGCGCT CGGTGGCAGA CGAGGCCGCG CTCGCCAAGC TGCCCGCAGA GAAACGCTAT GGCGGCGAAA CCTCCGCCCG CCAGGTGTTC CGCCGTCTGG CAGGCGCCTG GGCCTATTGG GGCTGGAAGG GGGGCTATTT CTCCACCGAG GCCGATGCCC GCACCTATTT CGACGAGATG CAGCTGATGC TGGCGCGCCA GATGGCCGCG CCGAACAGCC CGCAATGGTT CAACACCGGC CTGCACTGGG CCTACGGCAT CGACGGTCCC GCGCAGGGCC ACTACTACGT GGATCACAAG TCCGGCAAAC TGACCAAATC CACATCGTCC TACGAGCACC CGCAGCCCCA TGCCTGCTTC ATCCAGTCCG TCGCCGACGA CCTGGTGAAT GATGGCGGCA TCATGGACCT GTGGGTCCGC GAGGCGCGGC TTTTCAAATA CGGCTCCGGC ACCGGCACGA ATTTCTCCTC CCTTCGTGCC GAAGGAGAGG CTCTGTCAGG CGGGGGTAAG TCCTCCGGCC TGATGGGGTT CCTCAAGATC GGAGACCGGG CCGCAGGGGC CATCAAGTCC GGTGGCACCA CACGCCGGGC AGCGAAGATG GTGATCTGCG ACGCCGATCA CCCCGATATC GAGGAATTCG TGAACTGGAA GGTGAAGGAG GAGCAGAAGG TCGCCTCCCT CGTCGCCGGC TCGAAAATGC ACGAGGCCAA GCTGAACGAG ATTTTCGCCG CGATCGGCGA ATGGGACGGG CTGGGCGAGG ACGCGGTGGA CCCCACCAAG AACGCTGCGC TGAAATCCGC GATCCGGGCC GCCAAGAAGG TGCAGATCCC CGAGACCTAC ATCAAGCGGG TGCTGGATTA CGCCAAGCAG GGCTATGCCT CCATCGAGTT TCCGACCTAT GATACCGACT GGGATTCCGA GGCGTATAAC TCGGTCTCCG GGCAGAACTC CAACAACTCC GTGCGCGTGA CCGACGCCTT CCTGAAGGCC GTCAAAGACG ACGCGGATTG GGAGCTGATC CGCCGCACCG ACGGCAAGGT CGCCAAGACC ATCAAGGCGC GCGAGCTGTG GGAAACCATC GGCCACGCGG CCTGGGCCTG CGCCGATCCC GGCATCCAGT TCCACGACAC CGTCAACGAC TGGCACACCT GCCCCGAGGA TGGCGCGATC CGCGGCTCCA ACCCGTGCTC GGAATACATG TTCCTTGACG ATACCGCCTG CAACCTGGCG TCGATGAACC TGCTGACCTT CTACCGCGAC GGCAAGTTCG ACAGCGAAGG CTACATGCAC GCGGCGCGGC TCTGGACCCT GACCCTGGAA ATCTCGGTGC TCATGGCGCA GTTCCCGTCC AAGGAAATCG CGCAGCGCTC CTACGACTTC CGCACCCTCG GTCTCGGCTA TGCCAATATC GGCGGGCTGC TGATGAACAT GGGCTACGGC TATGACAGCG ACGAAGGAAG GGCGCTCTGC GGGGCGCTGA CCGCGATCAT GACCGGGGTG AGCTATGCCA CCTCCGCCGA GATCGCTGCA GAGGTCGGGC CGTTCCCGGG TTATGCCAAG AACGCCGATC ACATGCTCCG CGTGATCCGC AACCACCGCA ACGCGGCCTA TGGCAAGACC GACGGCTACG AGGCGCTCGC GACGAAACCC GTCGCGCTGG ACCATGCCAA CTGCCCGGAC CAGACGCTGG TGAAACTCGC CATGTCCTCC TGGGATGAGG CGCTGAAGCT GGGCGAGCAG CACGGGTATC GCAATGCGCA AGCCACGGTG ATCGCACCCA CGGGCACCAT CGGTCTGGTA ATGGATTGCG ACACCACCGG CATCGAGCCG GACTTCGCCC TGGTGAAGTT CAAGAAGCTC GCGGGCGGCG GCTACTTCAA GATCATCAAC CGCTCGGTCC CCGCGGCGCT GGACACGCTG GGCTACAGCT CGGCCCAGAT CGAAGAGATC ATCGCCTATG CGGTTGGCCA CGGCACGCTC GGCAATGCGC CCGGCGTGAA CCACACCGCC CTGATCGGCC ACGGCTTCGG GCCTGAGCAG ATCGAGAAGA TCGAGGCGGC GCTGCCTTCG GCCTTCGACA TCCGGTTCGT GTTCAACCAG TGGACCCTGG GCGAGGCGTT CTGCACCGAG GTGCTGGGCA TTCCCGCGGC GAAACTGAAC GATCCGACCT TCGACATGCT GCGGCACCTG GGTTTCGCGA AGAAAGACAT CGATCTGGCC AACGATCATG TCTGCGGGAC CATGACGCTG GAGGGCGCGC CCTTCCTGAA AGCCGAACAC TACTCGGTCT TCGACTGCGC CAACCCCTGC GGCAAGCGCG GCAAGCGGTT CCTGTCGGTG GACAGCCACA TTCACATGAT GGCCGCGGCG CAGAGCTTCA TCTCGGGCGC GATCTCGAAG ACGATCAACA TGCCCAACGA TGCCACGATC GAGGATTGCC AGAAGGCCTA TGAGCTGAGC TGGTCGCTGG GCACCAAGGC CAACGCGCTC TACCGCGACG GCTCCAAACT CAGCCAGCCG CTCGCTGCGG CCCTTGTGGA GGATGACGAG GAGGCCGCGG AGGTTCTGGA AACCGGCTCC ACCATGGAAA AGGCCCAGGT CATCGCCGAG AAGATCGTCG AGAAGGTGGT CATCAAGGAG GTCATCAAGG CCCACCGCGA AAAGCTGCCC GAGCGGCGCA AGGGTTATAC CCAGAAGGCC ATCGTGGGCG GACACAAGGT TTATCTGCGC ACGGGCGAGT ATGCCGACGG CAACCTCGGC GAGATCTTCA TCGACATGCA CAAGGAAGGC GCGGGCTTCC GGGCGATGAT GAACAACTTC GCCATCGCGG TCTCGGTCGG CCTGCAATAC GGCGTGCCGC TGGAGGAGTT CGTGGATGCC TTCACCTTCA CCAAGTTCGA GCCCGCGGGC ATGGTGCAGG GCAATGACAG CATCAAGAAC GCCACCTCGA TCCTGGATTA CATCTTCCGC GAGCTGGCGG TGAGCTATCT CGACCGCACG GATCTGGCCC ATGTGGCGCC CCAGGGCGCG ACCTTCGACG ATATCGGCCG GGGCGAGGAA GAGGGGGTCT CCAACGTCAA GGAGATGTCC GACAGTGCGG CCAGCAAGTC GCTGGAGGTG CTCAAGCAGA TCAGCTCGAC CGGGTATCTG CGCAAGCGGA TGCCGCAGGA GTTGGTGGTG CTGCAGGGCG GGGGCAAGCC GGTGACGGCG GAGATCCCGG TCGTCGGCAC GATCGGTGGC GGCGAGGTGG CGACGATGAC CGCGCTTCGC AGCGAAACGA CCGTGGCCAC GACGACGTCG ATCGACCCGC GCGCCAAGGC CAAGATGCAG GGCTACGAGG GCGAGGCCTG CGGCGAGTGC GGCAACTACA CGCTGGTGCG CAACGGCACC TGCATGAAGT GCAACACCTG CGGGGGTACG TCGGGATGCA GCTAG
|
Protein sequence | MKIERHFTKD GTDAYAGIEF SITASEIRNP DGTVVFRLDE VEVPSSWSQV ASDVIAQKYF RKAGVPAALK PVREKGVPEF LWRSVADEAA LAKLPAEKRY GGETSARQVF RRLAGAWAYW GWKGGYFSTE ADARTYFDEM QLMLARQMAA PNSPQWFNTG LHWAYGIDGP AQGHYYVDHK SGKLTKSTSS YEHPQPHACF IQSVADDLVN DGGIMDLWVR EARLFKYGSG TGTNFSSLRA EGEALSGGGK SSGLMGFLKI GDRAAGAIKS GGTTRRAAKM VICDADHPDI EEFVNWKVKE EQKVASLVAG SKMHEAKLNE IFAAIGEWDG LGEDAVDPTK NAALKSAIRA AKKVQIPETY IKRVLDYAKQ GYASIEFPTY DTDWDSEAYN SVSGQNSNNS VRVTDAFLKA VKDDADWELI RRTDGKVAKT IKARELWETI GHAAWACADP GIQFHDTVND WHTCPEDGAI RGSNPCSEYM FLDDTACNLA SMNLLTFYRD GKFDSEGYMH AARLWTLTLE ISVLMAQFPS KEIAQRSYDF RTLGLGYANI GGLLMNMGYG YDSDEGRALC GALTAIMTGV SYATSAEIAA EVGPFPGYAK NADHMLRVIR NHRNAAYGKT DGYEALATKP VALDHANCPD QTLVKLAMSS WDEALKLGEQ HGYRNAQATV IAPTGTIGLV MDCDTTGIEP DFALVKFKKL AGGGYFKIIN RSVPAALDTL GYSSAQIEEI IAYAVGHGTL GNAPGVNHTA LIGHGFGPEQ IEKIEAALPS AFDIRFVFNQ WTLGEAFCTE VLGIPAAKLN DPTFDMLRHL GFAKKDIDLA NDHVCGTMTL EGAPFLKAEH YSVFDCANPC GKRGKRFLSV DSHIHMMAAA QSFISGAISK TINMPNDATI EDCQKAYELS WSLGTKANAL YRDGSKLSQP LAAALVEDDE EAAEVLETGS TMEKAQVIAE KIVEKVVIKE VIKAHREKLP ERRKGYTQKA IVGGHKVYLR TGEYADGNLG EIFIDMHKEG AGFRAMMNNF AIAVSVGLQY GVPLEEFVDA FTFTKFEPAG MVQGNDSIKN ATSILDYIFR ELAVSYLDRT DLAHVAPQGA TFDDIGRGEE EGVSNVKEMS DSAASKSLEV LKQISSTGYL RKRMPQELVV LQGGGKPVTA EIPVVGTIGG GEVATMTALR SETTVATTTS IDPRAKAKMQ GYEGEACGEC GNYTLVRNGT CMKCNTCGGT SGCS
|
| |