| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_5520 |
|---|
| Symbol | |
|---|
| ID | 8547933 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 7575707 |
|---|
| End bp | 7578598 |
|---|
| Gene Length | 2892 bp |
|---|
| Protein Length | 963 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 646390193 |
|---|
| Product | ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
|---|
| Protein accession | YP_003269896 |
|---|
| Protein GI | 262198687 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02504] ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTACACA AAGTCGTGGG GAACGAACGC GAGACCAACA TGTCCGAGAC CAAGCAAGCC
GAGAGCAAGC GCGCTCGAGC ACAGGACCGT CCCGGGTTCG AAGTATCTCG TTACTTCACC
AGCGAGGGCG TCGATCCTTA TAGCGAGGTC GAGTGGGAGC TGCGCGACGC CACCATCACC
GGCGCCAACG GCAAGGTGTA CTTCGAGCAG AAGCAGGTCG AGTTCCCCAA GGCCTGGAGC
CAGACCGCGA CCAACGTCGT GGTGCAGAAG TACTTCCGCG GCACCGTGGG CACGCCCGAG
CGCGAGCGCT CGGTCAAGCA GATGATCGGC CGCGTGGCCG ACACCATCTT CGGCTGGGGC
CGCAAGGACG GCTACTTCCG CTCCGACAAG GACGCCTGGC GCTTCCGCGA CGAGCTGGTG
CACCTGCTGG TCAACCAGAA GATGGCCTTC AACTCGCCGG TGTGGTTCAA CGTCGGCGTC
GAGACCGAGC CGCAATGCTC GGCCTGCTTC ATCAACTCGG TGGACGACTC GATGTCGTCG
ATCCTCACGC TGGCGCGCAC CGAGGGCATG CTCTTCAAGT ACGGCTCGGG CACCGGCTCG
AACCTGTCGT CGCTGCGCTC CTCGGCCGAG AACCTGCACG GCGGCGGCAC CGCCTCGGGG
CCGGTGTCGT TCATGCGCGG CTTCGACGCC TTCGCCGGCG CCATCAAGTC GGGCGGCAAG
ACCCGGCGCG CGGCCAAGAT GGTCATCCTC GACGCCGAGC ACCCCGACAT CGTCGACTTC
GTCGAGTGCA AGGCCAAGGA GGAGCAGAAG GCCTGGGCGC TCATCGACGC CGGCTATGAC
GGCGGCTTCA ACGAGCCCGG CGGTGCCTAC GACTCGGTCA ACTACCAGAA CGCCAACCAC
TCGGTGCGCG TGAGCGACTC GTTCATGCAG GCCGTGGTCG ACGACTCCTC GTGGACCACC
CACGCGGTGC TCGACGGCCG CGACATCCAC ACCATGCCGG CGCGCGAGCT GATGCGCAAA
ATCGCCGACG CCGCCCACCT GTGCGGCGAC CCGGGCATGC AGTTCGACAG CACCATCAAC
GACTGGAACC CGTGCATCGG GACGGCGCGC ATCAACGCCT CGAACCCGTG CTCGGAGTAC
ATGTTCCTCG ACGACTCGGC GTGCAACCTG GCGTCGCTCA ACCTGCGCCG CTTCCAGAGC
GAGGACGGCA ACTTCGACGT CGAGGCGTAC AAGCACGCCA TCGAGATCAC CACCCTGGCG
ATGGAGATCA TCGTCGATAA CGCGTCCTAC CCGACGCCCA AGATCGGCGA GAACTCGCAT
CGTTTTCGTC CGCTCGGTCT GGGATACGCC AACCTCGGCG CGCTGCTGAT GTCGCGCGGC
CTGCCCTACG ACAGCGAGCC CGGCCGCGCC TACGCCGCCG CGCTCACGGC CATCCTGTGC
GGCCAGGCGT ATCGCACCAG CGCGCGCATC GCGGCCGACG CCACCGGCCC CTTCGCGGGC
TACGACGAGA ACCGCGAGCC CTTCCTGCGG GTCATGAACA AGCACCGCAA GGCGGTCGCC
GACATCGACG CCGCGCTGGT GCCCTACGAC CTCATGGAGG CCGCGCGCGG CGCCTGGAAC
GACGTGGTCG AGCTCGGTGA GAAGCACGGC TTCCGCAACG CGCAGACCAC GGTGCTGGCG
CCCACCGGCA CCATCGCCTT CCTCATGGAC TGCGACACCA CCGGCGTCGA GCCCGACATC
GCGCTGGTCA AGTACAAGCG TCTGGTCGGC GGCGGCATGC TCAAGATGGT CAACCAGACC
GTGCCCGAGG CGCTGCGCCG GCTCGGCTAC AGCGAGCAGC AGCTCGAGGG CATCATCAAC
CACATCGATA CCCAGGAGAG CATCGAGGGC ACCTCGGTGC TCAAAGAAGA GCACCTGCCG
GTCTTCGACT GCGCCTTCCG CTCGCCGAGC GGCACCCGCA GCATCCATTA CATGGGCCAC
ATCCGCATGA TGTCCGCGGT ACAGCCCTTC CTCTCGGGCG CCATCTCCAA GACCGTCAAC
CTGCCCAGCG ACTGCACGGT CGGCGACATC GAGGACGCCT ACCTGCAGGC GTGGAAGCTC
GGCCTCAAGG CCATCGCCGT GTACCGCGAC GGCTGCAAGC GCACCCAGCC GCTGTCGACC
AGCAAGCAGC AGGCGACCAG CAACGGCGCC ATCGCCAAGA CCCTGAGCGA GAGCGATGTG
CTCGAGCTGC TGGCCCCGGA CGAGCGCGCC ATGATCGAAG ATCTGCGCGT GCGCAAAGCC
GGCCCCGCCG GCCCGCCCGC GGCCGTGCGC TACAAGCTGC CGCCCGAGCG CCAGTCGTTC
ACGCACAAGT TCTCGGTCGG CGGCCACGAG GGCTACATCA CCGTCGGCCT GTACGAAGAC
GGACAGCCGG GCGAAATCTT CGTGCGCATG GCCAAGGAGG GCTCGGTGAT CGCCGGCCTG
ATGGACTCCT TCGCCACCGC CGCCAGCCTC GCCCTGCAGC ACGGCGTGCC GCTCGCGGTG
CTGTGCGACA AGTTCAAGGG CACCCGCTTC GAGCCCTCGG GCTTCACCGG CAACCCCGAT
ATCCCGATCG CCACCTCGAT CATGGACTAC CTGTTCCGCT GGGTACACCT GCGCTTCCTC
GACGGCGAGG TACATCCCGC GGCCCAGGGT CGCGGCGTCG GCCAGCTCGA CCTGCCCTCG
GTGCCGCTCA CGCCCGGCGA GCGCGGCGCC GCGCAGGCCG GTCACATCGT CATCGAGCAG
GCCGGCGAGA TGCCCAGCAC CTGGGTGCGC GAGTCCGACG CGCCGCCGTG CCACGAGTGC
GGCACCCTGA TGGTGCGCAA CGGCGCCTGT TACAAGTGCG CCAACTGCGG CGCCACCAGC
GGCTGCTCCT GA
|
|---|
| Protein sequence | MLHKVVGNER ETNMSETKQA ESKRARAQDR PGFEVSRYFT SEGVDPYSEV EWELRDATIT
GANGKVYFEQ KQVEFPKAWS QTATNVVVQK YFRGTVGTPE RERSVKQMIG RVADTIFGWG
RKDGYFRSDK DAWRFRDELV HLLVNQKMAF NSPVWFNVGV ETEPQCSACF INSVDDSMSS
ILTLARTEGM LFKYGSGTGS NLSSLRSSAE NLHGGGTASG PVSFMRGFDA FAGAIKSGGK
TRRAAKMVIL DAEHPDIVDF VECKAKEEQK AWALIDAGYD GGFNEPGGAY DSVNYQNANH
SVRVSDSFMQ AVVDDSSWTT HAVLDGRDIH TMPARELMRK IADAAHLCGD PGMQFDSTIN
DWNPCIGTAR INASNPCSEY MFLDDSACNL ASLNLRRFQS EDGNFDVEAY KHAIEITTLA
MEIIVDNASY PTPKIGENSH RFRPLGLGYA NLGALLMSRG LPYDSEPGRA YAAALTAILC
GQAYRTSARI AADATGPFAG YDENREPFLR VMNKHRKAVA DIDAALVPYD LMEAARGAWN
DVVELGEKHG FRNAQTTVLA PTGTIAFLMD CDTTGVEPDI ALVKYKRLVG GGMLKMVNQT
VPEALRRLGY SEQQLEGIIN HIDTQESIEG TSVLKEEHLP VFDCAFRSPS GTRSIHYMGH
IRMMSAVQPF LSGAISKTVN LPSDCTVGDI EDAYLQAWKL GLKAIAVYRD GCKRTQPLST
SKQQATSNGA IAKTLSESDV LELLAPDERA MIEDLRVRKA GPAGPPAAVR YKLPPERQSF
THKFSVGGHE GYITVGLYED GQPGEIFVRM AKEGSVIAGL MDSFATAASL ALQHGVPLAV
LCDKFKGTRF EPSGFTGNPD IPIATSIMDY LFRWVHLRFL DGEVHPAAQG RGVGQLDLPS
VPLTPGERGA AQAGHIVIEQ AGEMPSTWVR ESDAPPCHEC GTLMVRNGAC YKCANCGATS
GCS
|
|---|
| |