| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_1102 |
|---|
| Symbol | |
|---|
| ID | 5831422 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 1199725 |
|---|
| End bp | 1203456 |
|---|
| Gene Length | 3732 bp |
|---|
| Protein Length | 1243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641366897 |
|---|
| Product | ribonucleotide-diphosphate reductase subunit alpha |
|---|
| Protein accession | YP_001638577 |
|---|
| Protein GI | 163850534 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02504] ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGTTCG AGCGGCGCTA CACGACGGCA GGCCAGTCGC CCTACGCTGC CATCGCCTTC
CGCAAGGCGG TGAGCGAGAT TCGCAACCCG GACGGCTCGA TCGTCTTCCG GCTCGACGGC
ATTTCCGTGC CGGAGAGCTG GAGCCAGGTC GCCGCCGACG TGCTGGCGCA GAAGTATTTC
CGCAAGGCCG GGGTCCCGGC CCGCCTGAAG AAGGTCGAGG AGAACAGCGT TCCCTCCTTC
CTCTGGCGCG CCGTCCCGGA TGAGGCCGCG CTCGCCGAAC TGCCGGAGGA GGAGCGCTTC
GTCTCCGAGA TTTCGGCGAC CCAGGTGTTC GACCGGCTTG CCGGCTGCTG GACCTATTGG
GGCTGGAAGG GCGGCTACTT CTCGTCCGAG GAAGACGCCG CCGCCTTCAT GGACGAGCTG
CGCTTCATGC TCGCCCGCCA GATGGTGGCG CCGAACTCGC CGCAATGGTT CAACACCGGC
CTGCACTGGG CCTACGGCAT CGACGGGCCG AGCCAGGGTC ACTTCTACTG CGACCCGAAG
ACCGGCGTGC TGACGAAGTC GGCCACCGCC TACGAGCACC CGCAGCCGCA TGCCTGCTTC
ATCCAGTCCG TGCAGGACGA CCTCGTCAAC GAGGGCGGCA TCATGGACCT GTGGGTGCGC
GAGGCGCGCC TGTTCAAGTA CGGCTCGGGC ACCGGCTCGA ACTTCTCGAT GCTGCGCGGC
GAGAACGAGC GCCTCGGCGG CGGCGGCAAG TCGTCCGGTC TGATGTCCTT CCTCAAGATC
GGCGACCGGG CCGCGGGTGC GATCAAGTCG GGCGGCACCA CCCGGCGCGC CGCCAAGATG
GTGATCGTCG ACATCGACCA TCCCGATGTC GAGAACTTCA TCGACTGGAA GGTGAAGGAG
GAGCAGAAGG TCGCCGCGCT GGTGACCGGC TCCAAGGTCG TCTCCAAGCA CCTTACCGCG
GTGATGAAGG CCTGCACCCA GTGCGAGGCC GAGGGCGACG CCTGCTTCGA CCCCGAGCGC
AACCCGGCGC TCAAGCGCGA GATCAAGGCC GCCCGCAAGG CGATGGTGCC GGACGCCTAC
ATCAAGCGCG TCGTGCAGTT CGCCCGCCAG GGCTTCACCA AGATCGACTT CCCCGTCTAC
GACACCGATT GGGATTCGGA GGCCTACCTC ACGGTCGCCG GCCAGAACTC CAACAACTCG
GTCTCGCTGA CCGACGAATT CCTGCGCGCG GTGGAAGCGG ACGGGCCGTG GAGCCTGACC
TCGCGCACCA CGGGCAAGGT CGTGAAGACG CCCCAGGCGC GCGACCTGTG GGAGAAGATC
GGTGAGGCCG CCTGGGCCTC GGCCGATCCG GGCCTGCACT TCAACACCAC GATGAACGAC
TGGCACACCT GCCCGGAGGG CGGGCGGATC CGGGCCTCGA ACCCGTGCTC CGAGTACATG
TTCCTCGACG ACACGGCCTG TAACCTCGCC AGCGCCAACC TGCTGACGAT GTACGATCGT
CAGTCCAAGC ACTTCGACGT CGAGGCCTTC GAGCACCTCA ACCGGCTCTG GACCGTGGTG
CTCGAAATCT CGGTGATGAT GGCGCAGTTT CCGTCCAAGG AGATCGCCGA GCTTTCCTAC
AAGTACCGTA CGCTGGGCCT CGGCTACGCC AATATCGGCG GCCTGCTGAT GACCATGGGC
CTGCCCTACG ACTCCGATAA GGGCCGGGCG CTGGCCGGCG CGCTCACCGC GATCATGACG
GGCGTGGCCT ACGCCACCTC CGCCGAGATG GCGGCCGAAC TCGGCACCTT CGAGGCCTAC
CCGGACAACG CCGCGCACAT GCTGCGGGTG ATCCGCAACC ATCGCCGTGC GGCGCATGGC
GAGGTCGCCG GCTACGAGGG CCTGAACGTC AGCCCCGTGC CGCTCGACCA CGCCAACATC
CCGCAGGCCG ACATCGGCGC CCATGCCCGC GCGGCCTGGG ACCGGGCGCT GTCGCTCGGC
GAGCAGCACG GCTACCGCAA CGCGCAGGCC ACCGTGATCG CGCCGACCGG CACGATCGGT
CTCGTGATGG ATTGCGACAC CACCGGCATC GAGCCCGACT TCGCCCTGGT GAAGTTCAAG
AAGCTCGCCG GCGGCGGCTA CTTCAAGATC ATCAACCGCG CCGTGCCGGA CGCCCTGCGG
GCGCTGGGCT ACCGCGAATC CGAGATCGCC GAGATCGAGG CTTATGCCGT CGGCCACGGC
TCCATGGGCC AGGCTCCGGC CGTCAACCCG GGATCGCTGC GCGCCAAGGG CTTCACCGAC
GACAAGATCG CGGCGGTGGA GGCCGGGTTG AAGTCGGCCT TCGACATCAA GTTCGTGTTC
AACCGCTGGA ACCTCGGCGA CGACTTCCTC AAGGACACCC TCAAGGTGCC GGCGGAGAAG
CTCGCCGACC CGACCTTCGA GCTCCTGCCC TTCCTCGGCT TCTCGAAGCG CGAGATCGAG
GCCGCCAACA CCCATGTCTG CGGAGCGATG ACGCTGGAGG GCGCGCCCTT CCTCAAGCCC
GAGCACTACG CGGTGTTCGA TTGCGCCAAC CCGTGTGGGC GCACCGGCAA GCGCTACCTC
TCGGTCGAGA GCCACATCCA CATGATGGCC GCGGCGCAGC CCTTCATCTC GGGGGCGATC
TCCAAGACCA TCAACATGCC CAACGACGCC ACGGTGGAGG ATTGCAAGGC GGCATACCTG
CTGTCCTGGC GCCTCGCGCT CAAGGCGAAC GCCCTCTACC GCGACGGCTC CAAGCTCTCG
CAGCCGCTCA ACTCGGCGCT GATCGCCGAC GACGAGGAGG ACGCCGACGA GGCTCTGGAG
GCGATCATCC AGGCCCCGGC CGCCGCCAAG GCGACGGCGG CGGCGGAGAA GATCGTCGAG
CGGGTGATCG AGCGCATCGA GCGGATCCGC TCGCGCGAAA AGATGCCGGA CCGGCGCAAG
GGCTACACCC AGAAGGCCGT CGTCGGCGGC CACAAGGTCT ACCTGCGCAC CGGCGAATAC
GATGATGGCC GCCTCGGCGA GATCTTCATC GACATGCACA AGGAAGGCGC AACCTTCCGA
AGCCTGATGA ACAACTTCGC CATCGCGATC TCGCTCGGCC TCCAATACGG CGTGCCGCTG
GAGGAATACG TCGAAGCCTT CACCTTCACC CGCTTCGAGC CGGCGGGCTT CGTGCAGGGC
AACGACGCGA TCAAGAACGC GACCTCGCTG CTCGACTACG TGTTCCGCGA ACTCGCGGTC
TCGTATCTCG GCCGCACCGA CCTCGCCCAC GTCAATCCGG CCGAAATCGG CGGCACGGTG
CTCGGCGGCG GCGAGGGCGA CACCACCCGC GAGTCGGCCA AGCCGGCGCC GGCCGCCTCC
GCGGTCGTCT CCCGCGGCCT GCTGCGCGGC TCGGCCGACC GGCTCACCCT GATCCAGGGC
GGTCCGGCCG GCGCCACGAC GGGGGTGGCT GCAGCCGCCA CGGGCCAGTC GGCCCCGGCC
GGCGGCACGG TCCACGCCGT GCGGGGCGCG ACTGCCCTGA AGGCGGAGCC GCAGAGCCTC
GGCAGCATCG AGGCGCTGCC CTTCGCCAAG CCGGAGCCGA AGGCGGAGCG CACCGTCGCC
GACCGCCGGG CCGAAGCGAA GATGAAGGGC TATGTCGGCG AGGCCTGCCC CGAATGCGCG
AACTTCACGC TGGTCCGCAA CGGTACCTGC CTGAAGTGCG ACACCTGCGG TTCGACGACA
GGATGCTCAT AG
|
|---|
| Protein sequence | MRFERRYTTA GQSPYAAIAF RKAVSEIRNP DGSIVFRLDG ISVPESWSQV AADVLAQKYF
RKAGVPARLK KVEENSVPSF LWRAVPDEAA LAELPEEERF VSEISATQVF DRLAGCWTYW
GWKGGYFSSE EDAAAFMDEL RFMLARQMVA PNSPQWFNTG LHWAYGIDGP SQGHFYCDPK
TGVLTKSATA YEHPQPHACF IQSVQDDLVN EGGIMDLWVR EARLFKYGSG TGSNFSMLRG
ENERLGGGGK SSGLMSFLKI GDRAAGAIKS GGTTRRAAKM VIVDIDHPDV ENFIDWKVKE
EQKVAALVTG SKVVSKHLTA VMKACTQCEA EGDACFDPER NPALKREIKA ARKAMVPDAY
IKRVVQFARQ GFTKIDFPVY DTDWDSEAYL TVAGQNSNNS VSLTDEFLRA VEADGPWSLT
SRTTGKVVKT PQARDLWEKI GEAAWASADP GLHFNTTMND WHTCPEGGRI RASNPCSEYM
FLDDTACNLA SANLLTMYDR QSKHFDVEAF EHLNRLWTVV LEISVMMAQF PSKEIAELSY
KYRTLGLGYA NIGGLLMTMG LPYDSDKGRA LAGALTAIMT GVAYATSAEM AAELGTFEAY
PDNAAHMLRV IRNHRRAAHG EVAGYEGLNV SPVPLDHANI PQADIGAHAR AAWDRALSLG
EQHGYRNAQA TVIAPTGTIG LVMDCDTTGI EPDFALVKFK KLAGGGYFKI INRAVPDALR
ALGYRESEIA EIEAYAVGHG SMGQAPAVNP GSLRAKGFTD DKIAAVEAGL KSAFDIKFVF
NRWNLGDDFL KDTLKVPAEK LADPTFELLP FLGFSKREIE AANTHVCGAM TLEGAPFLKP
EHYAVFDCAN PCGRTGKRYL SVESHIHMMA AAQPFISGAI SKTINMPNDA TVEDCKAAYL
LSWRLALKAN ALYRDGSKLS QPLNSALIAD DEEDADEALE AIIQAPAAAK ATAAAEKIVE
RVIERIERIR SREKMPDRRK GYTQKAVVGG HKVYLRTGEY DDGRLGEIFI DMHKEGATFR
SLMNNFAIAI SLGLQYGVPL EEYVEAFTFT RFEPAGFVQG NDAIKNATSL LDYVFRELAV
SYLGRTDLAH VNPAEIGGTV LGGGEGDTTR ESAKPAPAAS AVVSRGLLRG SADRLTLIQG
GPAGATTGVA AAATGQSAPA GGTVHAVRGA TALKAEPQSL GSIEALPFAK PEPKAERTVA
DRRAEAKMKG YVGEACPECA NFTLVRNGTC LKCDTCGSTT GCS
|
|---|
| |