59 homologs were found in PanDaTox collection
for query gene Mbar_A3004 on replicon NC_007355
Organism: Methanosarcina barkeri str. Fusaro



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007355  Mbar_A3004  hypothetical protein  100 
 
 		 134 aa  270  6e-72  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.146588  hitchhiker  0.00337909 
 
 
-
 
NC_007355  Mbar_A1522  hypothetical protein  87.31 
 
 		 134 aa  245  2e-64  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.249328  normal  1 
 
 
-
 
NC_011832  Mpal_1577  pyridoxamine 5'-phosphate oxidase-related FMN-binding  69.4 
 
 		 134 aa  198  1.9999999999999998e-50  Methanosphaerula palustris E1-9c  Archaea  normal  0.188247  normal  1 
 
 
-
 
NC_009712  Mboo_1132  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  61.94 
 
 		 134 aa  184  5e-46  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.492287  normal  1 
 
 
-
 
NC_009051  Memar_1441  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  62.69 
 
 		 134 aa  183  6e-46  Methanoculleus marisnigri JR1  Archaea  normal  0.109181  n/a   
 
 
-
 
NC_007955  Mbur_1657  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  61.19 
 
 		 134 aa  181  4.0000000000000006e-45  Methanococcoides burtonii DSM 6242  Archaea  normal  1  n/a   
 
 
-
 
NC_007955  Mbur_0586  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  58.96 
 
 		 134 aa  170  5e-42  Methanococcoides burtonii DSM 6242  Archaea  normal  0.114456  n/a   
 
 
-
 
NC_007796  Mhun_0462  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  52.99 
 
 		 134 aa  160  5.0000000000000005e-39  Methanospirillum hungatei JF-1  Archaea  normal  1  normal  0.191705 
 
 
-
 
NC_007355  Mbar_A3577  hypothetical protein  55.47 
 
 		 137 aa  152  1e-36  Methanosarcina barkeri str. Fusaro  Archaea  normal  1  normal  0.179326 
 
 
-
 
NC_009051  Memar_0996  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  53.73 
 
 		 134 aa  152  1e-36  Methanoculleus marisnigri JR1  Archaea  normal  0.0213212  n/a   
 
 
-
 
NC_008942  Mlab_1261  hypothetical protein  48.12 
 
 		 133 aa  144  4.0000000000000006e-34  Methanocorpusculum labreanum Z  Archaea  normal  1  normal  1 
 
 
-
 
NC_007644  Moth_1426  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  45.86 
 
 		 133 aa  120  4e-27  Moorella thermoacetica ATCC 39073  Bacteria  unclonable  0.0000000000000163802  normal  0.0247628 
 
 
-
 
NC_009712  Mboo_0293  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  46.27 
 
 		 132 aa  118  1.9999999999999998e-26  Candidatus Methanoregula boonei 6A8  Archaea  normal  1  normal  1 
 
 
-
 
NC_008553  Mthe_1045  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  42.54 
 
 		 134 aa  114  3e-25  Methanosaeta thermophila PT  Archaea  normal  0.0950451  n/a   
 
 
-
 
NC_009637  MmarC7_1647  pyridoxamine 5'-phosphate oxidase-related FMN-binding  48.89 
 
 		 133 aa  111  4.0000000000000004e-24  Methanococcus maripaludis C7  Archaea  normal  0.215557  normal  0.955035 
 
 
-
 
NC_009135  MmarC5_0981  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  49.63 
 
 		 133 aa  111  4.0000000000000004e-24  Methanococcus maripaludis C5  Archaea  normal  1  n/a   
 
 
-
 
NC_009975  MmarC6_0267  pyridoxamine 5'-phosphate oxidase-related FMN-binding  48.89 
 
 		 133 aa  111  4.0000000000000004e-24  Methanococcus maripaludis C6  Archaea  normal  0.61348  n/a   
 
 
-
 
NC_009634  Mevan_1497  pyridoxamine 5'-phosphate oxidase-related FMN-binding  47.41 
 
 		 133 aa  107  6e-23  Methanococcus vannielii SB  Archaea  normal  0.771911  n/a   
 
 
-
 
NC_009635  Maeo_1125  pyridoxamine 5'-phosphate oxidase-related FMN-binding  45.65 
 
 		 136 aa  102  2e-21  Methanococcus aeolicus Nankai-3  Archaea  normal  0.502995  n/a   
 
 
-
 
NC_008553  Mthe_0783  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  41.41 
 
 		 151 aa  74.3  0.0000000000005  Methanosaeta thermophila PT  Archaea  normal  0.409434  n/a   
 
 
-
 
NC_009051  Memar_0266  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  37.89 
 
 		 163 aa  56.6  0.0000001  Methanoculleus marisnigri JR1  Archaea  normal  0.0674579  n/a   
 
 
-
 
NC_007794  Saro_1553  putative GAF sensor protein  27.88 
 
 		 448 aa  52.8  0.000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  decreased coverage  0.00827304  n/a   
 
 
-
 
NC_007796  Mhun_2381  hypothetical protein  36.84 
 
 		 161 aa  51.2  0.000005  Methanospirillum hungatei JF-1  Archaea  normal  1  normal  1 
 
 
-
 
NC_008782  Ajs_3714  putative GAF sensor protein  27.83 
 
 		 448 aa  49.7  0.00001  Acidovorax sp. JS42  Bacteria  normal  1  normal  0.865149 
 
 
-
 
NC_009675  Anae109_2916  putative GAF sensor protein  26.4 
 
 		 450 aa  49.7  0.00001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.129198  normal  0.11422 
 
 
-
 
NC_011992  Dtpsy_0480  putative phytochrome sensor protein  27.83 
 
 		 448 aa  48.9  0.00002  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_010085  Nmar_0576  pyridoxamine 5'-phosphate oxidase-related FMN-binding  26.72 
 
 		 148 aa  49.3  0.00002  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal  1 
 
 
-
 
NC_008531  LEUM_0920  pyridoxine 5'-phosphate oxidase V related favin-nucleotide-binding protein  25.56 
 
 		 132 aa  48.5  0.00003  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  hitchhiker  0.00810829  n/a   
 
 
-
 
NC_010085  Nmar_0941  pyridoxamine 5'-phosphate oxidase-related FMN-binding  29.13 
 
 		 134 aa  48.1  0.00004  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal  0.150544 
 
 
-
 
NC_007347  Reut_A0055  GAF:pyridoxamine 5'-phosphate oxidase-related, FMN-binding  27.36 
 
 		 458 aa  47.4  0.00007  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_009051  Memar_0265  hypothetical protein  31.39 
 
 		 159 aa  46.6  0.0001  Methanoculleus marisnigri JR1  Archaea  normal  0.120131  n/a   
 
 
-
 
NC_010803  Clim_0234  pyridoxamine 5'-phosphate oxidase-related FMN-binding  30.97 
 
 		 123 aa  46.2  0.0001  Chlorobium limicola DSM 245  Bacteria  normal  1  n/a   
 
 
-
 
NC_013947  Snas_3037  pyridoxamine 5'-phosphate oxidase-related FMN- binding protein  32.26 
 
 		 220 aa  46.2  0.0001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.423872  normal  1 
 
 
-
 
NC_014151  Cfla_2114  putative F420-dependent enzyme  30.84 
 
 		 133 aa  45.4  0.0003  Cellulomonas flavigena DSM 20109  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007796  Mhun_2382  hypothetical protein  27.41 
 
 		 154 aa  44.7  0.0004  Methanospirillum hungatei JF-1  Archaea  normal  1  normal  1 
 
 
-
 
NC_004116  SAG0422  hypothetical protein  25.38 
 
 		 129 aa  44.3  0.0005  Streptococcus agalactiae 2603V/R  Bacteria  normal  1  n/a   
 
 
-
 
NC_008254  Meso_0350  putative GAF sensor protein  29.81 
 
 		 443 aa  44.3  0.0005  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009921  Franean1_2174  pyridoxamine 5'-phosphate oxidase-related FMN-binding  28.12 
 
 		 155 aa  44.7  0.0005  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.794209 
 
 
-
 
NC_009338  Mflv_0034  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  26.92 
 
 		 204 aa  44.3  0.0006  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.203328  normal  0.307577 
 
 
-
 
NC_007517  Gmet_0160  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  33.04 
 
 		 123 aa  44.3  0.0006  Geobacter metallireducens GS-15  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009077  Mjls_0718  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  29.2 
 
 		 216 aa  44.3  0.0006  Mycobacterium sp. JLS  Bacteria  normal  0.12079  normal  0.495253 
 
 
-
 
NC_008726  Mvan_0936  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  30.97 
 
 		 204 aa  44.3  0.0006  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.921724  normal  1 
 
 
-
 
NC_008705  Mkms_0738  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  29.2 
 
 		 216 aa  44.3  0.0006  Mycobacterium sp. KMS  Bacteria  normal  1  normal  0.140358 
 
 
-
 
NC_008146  Mmcs_0724  pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein  29.2 
 
 		 216 aa  44.3  0.0006  Mycobacterium sp. MCS  Bacteria  normal  0.9535  n/a   
 
 
-
 
NC_012918  GM21_1980  pyridoxamine 5'-phosphate oxidase-related FMN-binding  26.47 
 
 		 131 aa  43.9  0.0007  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_014165  Tbis_1503  pyridoxamine 5'-phosphate oxidase-related FMN- binding protein  30.53 
 
 		 209 aa  43.9  0.0008  Thermobispora bispora DSM 43833  Bacteria  normal  0.237515  normal  0.514907 
 
 
-
 
NC_011146  Gbem_2246  pyridoxamine 5'-phosphate oxidase-related FMN-binding  27.64 
 
 		 131 aa  43.9  0.0008  Geobacter bemidjiensis Bem  Bacteria  normal  0.271466  n/a   
 
 
-
 
NC_012850  Rleg_0795  pyridoxamine 5'-phosphate oxidase-related FMN-binding  25.64 
 
 		 216 aa  43.9  0.0008  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011666  Msil_2565  pyridoxamine 5'-phosphate oxidase-related FMN-binding  30.95 
 
 		 207 aa  43.1  0.001  Methylocella silvestris BL2  Bacteria  n/a    normal  0.146359 
 
 
-
 
NC_013132  Cpin_2680  hypothetical protein  32.18 
 
 		 154 aa  42.7  0.002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.173077  normal  1 
 
 
-
 
NC_012791  Vapar_2899  pyridoxamine 5'-phosphate oxidase-related FMN-binding  29 
 
 		 204 aa  42  0.003  Variovorax paradoxus S110  Bacteria  normal  0.0971015  n/a   
 
 
-
 
NC_009953  Sare_4365  pyridoxamine 5'-phosphate oxidase-related FMN-binding  25.95 
 
 		 205 aa  41.6  0.003  Salinispora arenicola CNS-205  Bacteria  normal  0.390379  hitchhiker  0.00304411 
 
 
-
 
NC_012793  GWCH70_0973  hypothetical protein  27.73 
 
 		 151 aa  41.6  0.004  Geobacillus sp. WCH70  Bacteria  normal  1  n/a   
 
 
-
 
NC_007778  RPB_1699  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  36 
 
 		 231 aa  41.6  0.004  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.343483 
 
 
-
 
NC_013440  Hoch_1346  pyridoxamine 5'-phosphate oxidase-related FMN- binding protein  24.58 
 
 		 181 aa  41.2  0.005  Haliangium ochraceum DSM 14365  Bacteria  decreased coverage  0.00138595  normal  0.058768 
 
 
-
 
NC_009674  Bcer98_2654  hypothetical protein  28.93 
 
 		 151 aa  41.2  0.005  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.355698  n/a   
 
 
-
 
NC_009380  Strop_3980  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  30.09 
 
 		 205 aa  40.8  0.006  Salinispora tropica CNB-440  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013170  Ccur_10330  Pyridoxamine 5'-phosphate oxidase  27.88 
 
 		 124 aa  40.4  0.008  Cryptobacterium curtum DSM 15641  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013131  Caci_7774  pyridoxamine 5'-phosphate oxidase-related FMN- binding  24.72 
 
 		 129 aa  40  0.01  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
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