Gene Vapar_2899 details

Gene Information

• Locus tag: Vapar_2899
• ID: 7970788
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 3046549
• End bp: 3047163
• Gene Length: 615 bp
• Protein Length: 204 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644793484
• Product: pyridoxamine 5'-phosphate oxidase-related FMN-binding
• Protein accession: YP_002944785
• Protein GI: 239815875
• COG category: [R] General function prediction only
• COG ID: [COG3576] Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0971015
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCCATG CCATCGACAC CATCGAGCAG CTCGAAGCGC TGTTCGGCGA AGCCGGCGAG 
GCCTCGCTCA AGAAGGAGGT GCCCTGGCTG CACCCGAGCT ACCAGGCGCT GATTGCCGCT 
TCTCCTTTCG CGGTGCTCGC CACCACCGGG CCCGGCGGTC TCGACGCCTC GCCGCGCGGC 
GACCCGCCGG GCTTCGTGGC GGTGCAGGAC GAGAAGACGC TGCTGCTGCC CGAGCGCCGC 
GGCAACAACC GCATCGACAG CCTGCGCAAC ATCGTGGCCG ATCCGCGCGT GGCGCTGCTG 
TTCCTGATTC CCGGCGTGGG CGAGACCCTG CGCGTGAACG GCAGGGCGCG CATCACGACC 
GAGCCCGGGC TCATGGCCCG CTTCGCAATG GAGGGCAAGC CGCCGCAGTG CGTGATCGAG 
ATCCGGGTGG AATCGGTTTT CTTCCAGTGT GCGCGCGCCA TCCAGCGCTC GAAGCTGTGG 
GCGCCGCTGC CGGCGGATTC GCGCCGCGAG GTGCCCACGC CCGGCGCCAT CCTGTCGGCG 
CTGACCGATG CCGCCTTCGA TGGCGAGAGC TACGACCGCG AACTGCCGGC GCGGCAGCGC 
GCCACCTTGT ATTGA 

 

Protein sequence

MTHAIDTIEQ LEALFGEAGE ASLKKEVPWL HPSYQALIAA SPFAVLATTG PGGLDASPRG 
DPPGFVAVQD EKTLLLPERR GNNRIDSLRN IVADPRVALL FLIPGVGETL RVNGRARITT 
EPGLMARFAM EGKPPQCVIE IRVESVFFQC ARAIQRSKLW APLPADSRRE VPTPGAILSA 
LTDAAFDGES YDRELPARQR ATLY