78 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
A2cp1_0095  CDS  NC_011891  104609  105370  762  Phosphomethylpyrimidine kinase  YP_002490520  decreased coverage  4.58496e-08  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_0148  CDS  NC_011891  165327  165860  534  type IV pilus assembly PilZ  YP_002490573  decreased coverage  0.00847782  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_0188  CDS  NC_011891  209536  210519  984  transglutaminase domain protein  YP_002490613  decreased coverage  0.00321272  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_0269  CDS  NC_011891  300497  301498  1002  RDD domain containing protein  YP_002490694  decreased coverage  0.00578779  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_0281  CDS  NC_011891  315182  316831  1650  methylmalonyl-CoA mutase, large subunit  YP_002490706  decreased coverage  0.0034305  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_0826  CDS  NC_011891  923582  925438  1857  heat shock protein DnaJ domain protein  YP_002491244  decreased coverage  3.40576e-06  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_1019  CDS  NC_011891  1143272  1143724  453  protein of unknown function DUF1469  YP_002491436  decreased coverage  0.00635959  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_1020  CDS  NC_011891  1143855  1144796  942  DNA polymerase LigD, polymerase domain protein  YP_002491437  decreased coverage  0.00719502  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_1254  CDS  NC_011891  1402652  1403194  543  carbonic anhydrase  YP_002491664  decreased coverage  2.71417e-08  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_1351  CDS  NC_011891  1511928  1512437  510  hypothetical protein  YP_002491761  decreased coverage  0.00995959  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_1399  CDS  NC_011891  1563526  1564668  1143  FHA domain containing protein  YP_002491809  decreased coverage  0.00835094  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_1435  CDS  NC_011891  1606105  1606716  612  Thiamine-phosphate diphosphorylase  YP_002491845  decreased coverage  0.00770563  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_1436  CDS  NC_011891  1606735  1607430  696  Methyltransferase type 11  YP_002491846  decreased coverage  0.00774998  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_1466  CDS  NC_011891  1638345  1638605  261  hypothetical protein  YP_002491876  decreased coverage  0.0028691  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_1467  CDS  NC_011891  1638694  1639494  801  PHP domain protein  YP_002491877  decreased coverage  0.00774998  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_1501  CDS  NC_011891  1681455  1682093  639  Sua5/YciO/YrdC/YwlC family protein  YP_002491911  decreased coverage  0.000418868  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_1502  CDS  NC_011891  1682112  1683461  1350  hypothetical protein  YP_002491912  decreased coverage  0.00218363  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_1603  CDS  NC_011891  1791322  1793904  2583  TonB family protein  YP_002492013  decreased coverage  0.00363915  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_1699  CDS  NC_011891  1893152  1893652  501  protein of unknown function DUF1468  YP_002492108  decreased coverage  0.00744952  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_1700  CDS  NC_011891  1893968  1894276  309  hypothetical protein  YP_002492109  decreased coverage  0.00489273  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_1812  CDS  NC_011891  2027176  2027694  519  RNA polymerase, sigma-24 subunit, ECF subfamily  YP_002492220  decreased coverage  1.25061e-05  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_1813  CDS  NC_011891  2027681  2028427  747  putative transmembrane anti-sigma factor  YP_002492221  decreased coverage  2.68109e-05  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_1929  CDS  NC_011891  2178026  2178712  687  Methyltransferase type 11  YP_002492337  decreased coverage  2.45244e-05  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_1930  CDS  NC_011891  2178717  2180183  1467  serine/threonine protein kinase  YP_002492338  decreased coverage  6.4129e-05  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2118  CDS  NC_011891  2365727  2367319  1593  MJ0042 family finger-like protein  YP_002492524  decreased coverage  0.000277169  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2271  CDS  NC_011891  2522319  2522720  402  hypothetical protein  YP_002492675  decreased coverage  0.00292445  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2272  CDS  NC_011891  2522774  2523859  1086  protein of unknown function DUF59  YP_002492676  decreased coverage  0.00578779  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2314  CDS  NC_011891  2564047  2566281  2235  Pyrrolo-quinoline quinone  YP_002492718  decreased coverage  0.00748637  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2421  CDS  NC_011891  2680375  2680698  324  4Fe-4S ferredoxin iron-sulfur binding domain protein  YP_002492825  decreased coverage  0.00281921  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2422  CDS  NC_011891  2680982  2681350  369  preprotein translocase, SecG subunit  YP_002492826  decreased coverage  0.00340269  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2423  CDS  NC_011891  2681347  2682108  762  triosephosphate isomerase  YP_002492827  decreased coverage  0.00789739  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2528  CDS  NC_011891  2796171  2798744  2574  Peptidase M1 membrane alanine aminopeptidase  YP_002492932  decreased coverage  0.00982821  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2560  CDS  NC_011891  2838491  2839540  1050  flagellar motor switch protein FliG  YP_002492963  decreased coverage  0.00224788  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2561  CDS  NC_011891  2839556  2840182  627  flagellar assembly protein FliH  YP_002492964  decreased coverage  0.00219056  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2595  CDS  NC_011891  2873225  2875303  2079  flagellar biosynthesis protein FlhA  YP_002492998  decreased coverage  0.00863118  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2596  CDS  NC_011891  2875337  2876479  1143  GTP-binding signal recognition particle SRP54 G- domain protein  YP_002492999  decreased coverage  0.00656754  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2613  CDS  NC_011891  2889686  2890039  354  hypothetical protein  YP_002493016  decreased coverage  2.74645e-07  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2614  CDS  NC_011891  2890036  2890311  276  hypothetical protein  YP_002493017  decreased coverage  2.37412e-07  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2615  CDS  NC_011891  2890423  2891262  840  flagellin domain protein  YP_002493018  decreased coverage  1.13225e-07  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2630  CDS  NC_011891  2905392  2906033  642  Radical SAM domain protein  YP_002493033  decreased coverage  0.00181244  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2685  CDS  NC_011891  2963518  2964033  516  transcriptional regulator, CarD family  YP_002493088  decreased coverage  0.000114953  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2702  CDS  NC_011891  2982570  2983607  1038  phosphoribosylaminoimidazole synthetase  YP_002493105  decreased coverage  0.00227816  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2703  CDS  NC_011891  2983604  2984281  678  phosphoribosylglycinamide formyltransferase  YP_002493106  decreased coverage  0.00267955  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2765  CDS  NC_011891  3050730  3051743  1014  H+transporting two-sector ATPase C (AC39) subunit  YP_002493168  decreased coverage  0.00018825  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2773  CDS  NC_011891  3058707  3060824  2118  CheA signal transduction histidine kinase  YP_002493176  decreased coverage  0.00107192  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2836  CDS  NC_011891  3135055  3135348  294  hypothetical protein  YP_002493239  decreased coverage  0.00989169  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2853  CDS  NC_011891  3154823  3155758  936  cysteine synthase A  YP_002493256  decreased coverage  4.34249e-05  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2855  CDS  NC_011891  3157499  3158125  627  hypothetical protein  YP_002493258  decreased coverage  6.91986e-05  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2856  CDS  NC_011891  3158659  3162012  3354  hypothetical protein  YP_002493259  decreased coverage  0.00658326  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2918  CDS  NC_011891  3232159  3233064  906  CheW protein  YP_002493321  decreased coverage  0.00571645  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_2919  CDS  NC_011891  3233079  3233903  825  general secretion pathway protein-related protein  YP_002493322  decreased coverage  0.00976352  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_3043  CDS  NC_011891  3366448  3366888  441  hydrogenase maturation protease  YP_002493444  decreased coverage  0.000605484  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_3044  CDS  NC_011891  3367123  3367818  696  protein of unknown function UPF0153  YP_002493445  decreased coverage  0.0010524  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_3045  CDS  NC_011891  3367853  3369169  1317  protein of unknown function DUF224 cysteine-rich region domain protein  YP_002493446  decreased coverage  0.00467666  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_3137  CDS  NC_011891  3467940  3469349  1410  histidine kinase  YP_002493538  decreased coverage  0.00554367  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_3191  CDS  NC_011891  3533685  3535142  1458  hypothetical protein  YP_002493592  decreased coverage  0.00498047  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_3293  CDS  NC_011891  3662772  3665570  2799  Peptidase M1 membrane alanine aminopeptidase  YP_002493693  decreased coverage  0.00996699  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_3485  CDS  NC_011891  3893609  3895015  1407  FG-GAP repeat protein  YP_002493881  decreased coverage  0.00301004  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_3760  CDS  NC_011891  4178843  4179976  1134  hypothetical protein  YP_002494152  decreased coverage  3.61746e-06  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_3791  CDS  NC_011891  4211269  4212216  948  FHA domain containing protein  YP_002494181  decreased coverage  1.34808e-06  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_3811  CDS  NC_011891  4234049  4235380  1332  type I citrate synthase  YP_002494201  decreased coverage  0.00120684  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_3928  CDS  NC_011891  4368693  4369298  606  tRNA (guanine-N(7)-)-methyltransferase  YP_002494317  decreased coverage  0.00397463  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_4017  CDS  NC_011891  4474895  4475368  474  hypothetical protein  YP_002494402  decreased coverage  0.00574371  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_4018  CDS  NC_011891  4475365  4476306  942  RNA polymerase, sigma-24 subunit, ECF subfamily  YP_002494403  decreased coverage  0.00745227  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_4059  CDS  NC_011891  4533551  4535335  1785  protein of unknown function DUF1302  YP_002494443  decreased coverage  0.00304001  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_4097  CDS  NC_011891  4580442  4581245  804  MCP methyltransferase, CheR-type  YP_002494481  decreased coverage  5.95426e-06  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_4098  CDS  NC_011891  4581242  4581808  567  CheW protein  YP_002494482  decreased coverage  1.9346e-06  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_4117  CDS  NC_011891  4603161  4603796  636  Uracil-DNA glycosylase superfamily  YP_002494501  decreased coverage  0.00101771  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_4170  CDS  NC_011891  4655340  4655867  528  hypothetical protein  YP_002494553  decreased coverage  0.00792981  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_4180  CDS  NC_011891  4664407  4665405  999  MaoC domain protein dehydratase  YP_002494563  decreased coverage  0.00128585  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_4198  CDS  NC_011891  4684494  4685276  783  Indole-3-glycerol-phosphate synthase  YP_002494581  decreased coverage  0.00333421  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_4199  CDS  NC_011891  4685276  4685899  624  Phosphoribosylanthranilate isomerase  YP_002494582  decreased coverage  0.000908275  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_4217  CDS  NC_011891  4698486  4699373  888  dihydrodipicolinate synthase  YP_002494600  decreased coverage  0.00266238  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_4234  CDS  NC_011891  4714181  4716037  1857  hypothetical protein  YP_002494617  decreased coverage  0.00410202  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_4241  CDS  NC_011891  4723288  4725039  1752  oligopeptide transporter, OPT superfamily  YP_002494624  decreased coverage  0.00336098  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_4253  CDS  NC_011891  4734458  4735501  1044  aminotransferase class I and II  YP_002494636  decreased coverage  0.00377555  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_4382  CDS  NC_011891  4876691  4878631  1941  histidine kinase  YP_002494765  decreased coverage  0.00540034  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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A2cp1_R0032  tRNA  NC_011891  2680790  2680871  82  tRNA-Leu    decreased coverage  0.00179393  n/a    Anaeromyxobacter dehalogenans 2CP-1  Bacteria 
 
 
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