121 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Bcep18194_A3183  CDS  NC_007510  1822  2928  1107  DNA polymerase III subunit beta  YP_367429  decreased coverage  0.00267181  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3370  CDS  NC_007510  227059  228255  1197  flagellar biosynthesis protein FlhB  YP_367616  decreased coverage  0.00184569  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3450  CDS  NC_007510  323968  324795  828  50S ribosomal protein L2  YP_367696  hitchhiker  7.64843e-09  decreased coverage  0.00435128  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3451  CDS  NC_007510  324806  325081  276  30S ribosomal protein S19  YP_367697  hitchhiker  4.90482e-09  decreased coverage  0.00387887  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3452  CDS  NC_007510  325094  325423  330  50S ribosomal protein L22  YP_367698  hitchhiker  4.8605e-09  decreased coverage  0.00396929  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3453  CDS  NC_007510  325435  326235  801  30S ribosomal protein S3  YP_367699  hitchhiker  2.12964e-07  decreased coverage  0.00445176  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3454  CDS  NC_007510  326238  326654  417  50S ribosomal protein L16  YP_367700  hitchhiker  5.81922e-08  decreased coverage  0.00396929  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3455  CDS  NC_007510  326664  326858  195  50S ribosomal protein L29  YP_367701  hitchhiker  2.52439e-08  decreased coverage  0.00364799  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3456  CDS  NC_007510  326855  327127  273  30S ribosomal protein S17  YP_367702  hitchhiker  3.80443e-11  decreased coverage  0.00396929  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3457  CDS  NC_007510  327437  327805  369  50S ribosomal protein L14  YP_367703  hitchhiker  9.89644e-10  decreased coverage  0.00422034  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3458  CDS  NC_007510  327815  328123  309  50S ribosomal protein L24  YP_367704  hitchhiker  5.15991e-08  decreased coverage  0.00425299  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3459  CDS  NC_007510  328140  328679  540  50S ribosomal protein L5  YP_367705  hitchhiker  5.29438e-07  decreased coverage  0.00459021  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3460  CDS  NC_007510  328687  328992  306  30S ribosomal protein S14  YP_367706  hitchhiker  2.54777e-07  decreased coverage  0.00448614  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3461  CDS  NC_007510  329007  329402  396  30S ribosomal protein S8  YP_367707  hitchhiker  3.15626e-07  decreased coverage  0.00455507  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3462  CDS  NC_007510  329421  329951  531  50S ribosomal protein L6  YP_367708  hitchhiker  2.87307e-05  decreased coverage  0.00473222  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3558  CDS  NC_007510  424146  424784  639  TPR repeat-containing protein  YP_367803  decreased coverage  0.000842214  normal  0.636992  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3559  CDS  NC_007510  424831  425346  516  hypothetical protein  YP_367804  decreased coverage  0.00132458  normal  0.648001  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3650  CDS  NC_007510  535710  536906  1197  cell division protein FtsZ  YP_367895  decreased coverage  4.96958e-07  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3651  CDS  NC_007510  537095  537601  507  Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen  YP_367896  decreased coverage  1.35148e-05  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3935  CDS  NC_007510  855248  856687  1440  EmrB/QacA family drug resistance transporter  YP_368178  normal  decreased coverage  0.000976381  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3944  CDS  NC_007510  866483  867265  783  putative transmembrane transcriptional regulator (anti-sigma factor)  YP_368187  decreased coverage  0.00740335  normal  0.0369582  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3954  CDS  NC_007510  877442  877735  294  co-chaperonin GroES  YP_368197  decreased coverage  6.45476e-05  normal  0.0983553  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3969  CDS  NC_007510  890447  891508  1062  dTDP-glucose 4,6-dehydratase  YP_368212  decreased coverage  0.00429727  normal  0.623158  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4112  CDS  NC_007510  1042185  1042457  273  hypothetical protein  YP_368353  decreased coverage  1.32695e-11  normal  0.421912  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4123  CDS  NC_007510  1050950  1052683  1734  FAD-dependent oxidoreductase  YP_368364  decreased coverage  0.000743874  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4124  CDS  NC_007510  1052848  1053657  810  LuxR family transcriptional regulator  YP_368365  decreased coverage  0.000894771  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4175  CDS  NC_007510  1110871  1111620  750  electron transfer flavoprotein subunit beta  YP_368416  decreased coverage  0.00698848  normal  0.410728  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4230  CDS  NC_007510  1166100  1166735  636  hypothetical protein  YP_368471  decreased coverage  0.00879956  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4311  CDS  NC_007510  1258289  1258624  336  hypothetical protein  YP_368551  decreased coverage  1.44232e-05  normal  0.216196  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4312  CDS  NC_007510  1258818  1259246  429  hypothetical protein  YP_368552  decreased coverage  0.000185847  normal  0.213102  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4313  CDS  NC_007510  1259337  1259792  456  BadM/Rrf2 family transcriptional regulator  YP_368553  decreased coverage  7.50143e-05  normal  0.208214  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4429  CDS  NC_007510  1385439  1386245  807  hydroxyacylglutathione hydrolase  YP_368669  decreased coverage  1.56624e-08  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4525  CDS  NC_007510  1489617  1491932  2316  cellulose synthase regulator protein  YP_368765  decreased coverage  0.00483718  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4613  CDS  NC_007510  1594331  1594684  354  endoribonuclease L-PSP  YP_368853  decreased coverage  0.00014505  normal  0.903485  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4614  CDS  NC_007510  1594724  1596958  2235  (p)ppGpp synthetase I, SpoT/RelA  YP_368854  decreased coverage  0.00159088  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4663  CDS  NC_007510  1654382  1655725  1344  Flp pilus assembly protein ATPase CpaF  YP_368902  normal  0.0858858  decreased coverage  0.000709192  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4664  CDS  NC_007510  1655718  1656698  981  Flp pilus assembly protein TadB  YP_368903  normal  0.265819  decreased coverage  0.000651584  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4665  CDS  NC_007510  1656703  1657701  999  Flp pilus assembly protein TadC  YP_368904  normal  0.502777  decreased coverage  0.000679832  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4666  CDS  NC_007510  1657731  1658558  828  TPR-repeat pilus assembly protein TadD  YP_368905  normal  0.988456  decreased coverage  0.000651584  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4667  CDS  NC_007510  1658582  1658914  333  hypothetical protein  YP_368906  normal  0.613007  decreased coverage  0.000608941  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4668  CDS  NC_007510  1658927  1660738  1812  membrane protein  YP_368907  normal  0.270258  decreased coverage  0.000905292  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4687  CDS  NC_007510  1682499  1682984  486  hypothetical protein  YP_368926  decreased coverage  1.61275e-06  normal  0.469864  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4740  CDS  NC_007510  1730870  1731772  903  Sulfate ABC transporter, inner membrane subunit CysT  YP_368979  decreased coverage  0.00816228  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4741  CDS  NC_007510  1731769  1732719  951  Sulfate ABC transporter, inner membrane subunit CysW  YP_368980  decreased coverage  0.00402264  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4789  CDS  NC_007510  1802652  1804028  1377  lysine/ornithine N-monooxygenase  YP_369028  decreased coverage  0.00013329  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4790  CDS  NC_007510  1804051  1806303  2253  TonB-dependent siderophore receptor  YP_369029  decreased coverage  0.00609925  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4843  CDS  NC_007510  1861011  1862339  1329  major facilitator transporter  YP_369082  decreased coverage  0.000178164  normal  0.0122394  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4845  CDS  NC_007510  1863248  1864414  1167  ABC transporter, periplasmic ligand binding protein  YP_369084  normal  0.0226871  decreased coverage  0.000145502  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4846  CDS  NC_007510  1864464  1865543  1080  ABC transporter, ATPase subunit  YP_369085  normal  0.106176  decreased coverage  0.000133931  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4847  CDS  NC_007510  1865581  1866450  870  ABC transporter, inner membrane subunit  YP_369086  normal  0.131167  decreased coverage  0.000130269  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A5127  CDS  NC_007510  2170208  2170534  327  hypothetical protein  YP_369365  decreased coverage  0.0017453  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A5251  CDS  NC_007510  2305048  2305596  549  Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen  YP_369489  decreased coverage  1.29337e-05  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A5398  CDS  NC_007510  2466974  2467243  270  hypothetical protein  YP_369636  decreased coverage  0.00136275  normal  0.270235  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A5399  CDS  NC_007510  2467357  2468133  777  Beta-lactamase-like  YP_369637  decreased coverage  0.00646528  normal  0.27837  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A5400  CDS  NC_007510  2468138  2469283  1146  uncharacterized lipoprotein  YP_369638  decreased coverage  0.00915986  normal  0.289961  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A5470  CDS  NC_007510  2554269  2555171  903  LysR family transcriptional regulator  YP_369708  decreased coverage  0.000367157  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A5614  CDS  NC_007510  2712949  2715033  2085  potassium-transporting ATPase subunit B  YP_369852  decreased coverage  0.00425653  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A5746  CDS  NC_007510  2851838  2852596  759  3-ketoacyl-(acyl-carrier-protein) reductase  YP_369984  decreased coverage  0.00520623  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A5767  CDS  NC_007510  2878788  2879432  645  OmpA/MotB family protein  YP_370005  decreased coverage  0.00312455  normal  0.42403  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A5852  CDS  NC_007510  2969212  2969415  204  cold-shock DNA-binding protein family protein  YP_370090  decreased coverage  5.87256e-11  normal  0.480668  Burkholderia sp. 383  Bacteria 
 
 
 
Bcep18194_A6131  CDS  NC_007510  3275219  3276100  882  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase  YP_370369  decreased coverage  3.59515e-10  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A6220  CDS  NC_007510  3376599  3377807  1209  Acyl-CoA dehydrogenase  YP_370458  decreased coverage  0.0082466  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A6494  CDS  NC_007510  3663873  3664928  1056  ABC Fe3+ siderophore transporter, periplasmic ligand binding protein  YP_370732  decreased coverage  0.000128013  normal  0.750448  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_AR0020  tRNA  NC_007510  300859  300941  83  tRNA-Tyr    decreased coverage  2.30184e-11  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_AR0039  tRNA  NC_007510  1053831  1053903  73  tRNA-Thr    decreased coverage  0.000122131  normal  0.654023  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_AR0043  tRNA  NC_007510  1192554  1192626  73  tRNA-Gly    decreased coverage  0.00341468  normal  0.996518  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B0078  CDS  NC_007511  85810  86706  897  dihydrodipicolinate synthase  YP_370839  decreased coverage  0.00671629  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B0120  CDS  NC_007511  129495  130919  1425  outer membrane porin  YP_370881  decreased coverage  0.00350083  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B0121  CDS  NC_007511  130974  131969  996  DedA family protein  YP_370882  decreased coverage  0.00355931  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B0515  CDS  NC_007511  580207  580536  330  hypothetical protein  YP_371273  decreased coverage  1.89507e-09  normal  Burkholderia sp. 383  Bacteria 
 
 
 
Bcep18194_B0648  CDS  NC_007511  724363  728703  4341  Rhs family protein  YP_371406  decreased coverage  0.000723582  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B0759  CDS  NC_007511  864342  866564  2223  Amylo-alpha-1,6-glucosidase  YP_371517  normal  0.043283  decreased coverage  1.65021e-05  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B0760  CDS  NC_007511  866661  866912  252  hypothetical protein  YP_371518  normal  0.110621  decreased coverage  8.50392e-06  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B0767  CDS  NC_007511  872317  873702  1386  periplasmic sensor signal transduction histidine kinase  YP_371525  decreased coverage  0.000842214  hitchhiker  0.00217616  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1029  CDS  NC_007511  1157140  1157349  210  hypothetical protein  YP_371787  normal  decreased coverage  0.0093112  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1064  CDS  NC_007511  1189574  1190254  681  Type II secretory pathway component PulJ  YP_371822  decreased coverage  0.00786562  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1087  CDS  NC_007511  1228561  1230357  1797  MotA/TolQ/ExbB proton channel  YP_371845  decreased coverage  0.000962589  normal  0.110672  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1088  CDS  NC_007511  1230376  1230786  411  biopolymer transport protein ExbD/TolR  YP_371846  decreased coverage  0.00516772  normal  0.155031  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1155  CDS  NC_007511  1297176  1298090  915  LysR family transcriptional regulator  YP_371913  decreased coverage  0.0046037  normal  0.529732  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1193  CDS  NC_007511  1343393  1344553  1161  HlyD family secretion protein  YP_371951  decreased coverage  6.22308e-11  normal  0.342064  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1270  CDS  NC_007511  1438065  1438748  684  putative threonine efflux protein-like  YP_372028  decreased coverage  0.00299946  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1271  CDS  NC_007511  1438845  1440299  1455  EmrB/QacA family drug resistance transporter  YP_372029  decreased coverage  0.00841234  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1290  CDS  NC_007511  1458327  1460570  2244  penicillin-binding protein 1C  YP_372048  decreased coverage  0.00589164  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1395  CDS  NC_007511  1586054  1587007  954  3-hydroxyacyl-CoA dehydrogenase  YP_372153  decreased coverage  0.00339633  normal  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1559  CDS  NC_007511  1762777  1767045  4269  hypothetical protein  YP_372317  decreased coverage  0.00113034  normal  0.54885  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1621  CDS  NC_007511  1844752  1845876  1125  GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase  YP_372379  decreased coverage  0.00103143  normal  0.573554  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1628  CDS  NC_007511  1853906  1854517  612  hypothetical protein  YP_372386  decreased coverage  0.00592272  normal  0.624531  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1661  CDS  NC_007511  1890004  1891125  1122  branched chain amino acid ABC transporter periplasmic ligand-binding protein  YP_372419  decreased coverage  0.00010868  normal  0.0729717  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1760  CDS  NC_007511  2001306  2002490  1185  hypothetical protein  YP_372518  normal  decreased coverage  0.00200685  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1871  CDS  NC_007511  2142092  2143363  1272  major facilitator transporter  YP_372629  decreased coverage  0.00153919  normal  0.351915  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1872  CDS  NC_007511  2143391  2145811  2421  Alpha-glucosidase  YP_372630  decreased coverage  0.00900175  normal  0.24419  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1873  CDS  NC_007511  2145915  2147102  1188  outer membrane protein (porin)  YP_372631  decreased coverage  0.000645139  normal  0.212155  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1900  CDS  NC_007511  2175919  2176746  828  SH3 domain-containing protein  YP_372658  decreased coverage  0.00351157  normal  0.463921  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B1901  CDS  NC_007511  2176780  2177220  441  hypothetical protein  YP_372659  decreased coverage  0.00125649  normal  0.432856  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B2019  CDS  NC_007511  2312518  2314767  2250  diguanylate cyclase/phosphodiesterase with GAF sensor  YP_372776  decreased coverage  0.00647394  normal  0.691618  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B2041  CDS  NC_007511  2338313  2339488  1176  LysR family transcriptional regulator  YP_372798  decreased coverage  0.000497451  normal  0.0972832  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B2053  CDS  NC_007511  2350698  2351675  978  type II secretion system protein  YP_372810  decreased coverage  8.24726e-06  normal  0.0936478  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B2085  CDS  NC_007511  2387573  2388550  978  LysR family transcriptional regulator  YP_372840  decreased coverage  0.0073681  normal  0.210389  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B2086  CDS  NC_007511  2388559  2389296  738  Short-chain dehydrogenase/reductase SDR  YP_372841  decreased coverage  0.00879174  normal  0.332592  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_B2125  CDS  NC_007511  2436440  2437633  1194  tryptophan synthase subunit beta  YP_372880  normal  0.661691  decreased coverage  0.00480263  Burkholderia sp. 383  Bacteria 
 
 
-
 
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