| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcep18194_B1271 |
|---|
| Symbol | |
|---|
| ID | 3753036 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia sp. 383 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007511 |
|---|
| Strand | - |
|---|
| Start bp | 1438845 |
|---|
| End bp | 1440299 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637766120 |
|---|
| Product | EmrB/QacA family drug resistance transporter |
|---|
| Protein accession | YP_372029 |
|---|
| Protein GI | 78062121 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.00841234 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGACC AACACGCTCG GCCGACGCAG GACCACGCGG CCGGCCGGCC CGATCCGTCG
ATCTGGAAGG TCAGCGCGGT CGCAGTGCTC GGCTCGCTGC TGTCGCAGCT TGACGCGACG
ATCGTCAACG TGTCGCTGTC AAGCCTCGCG ACCGACCTGC ACGCGAGCCT CGCGACGATC
CAGTGGGTGA CGAGCGGCTA CCTGCTCGCG CTCACGCTGG TGCTGCCGCT GAACGGCTGG
CTCGTCGACC GGATCGGCGC GAAGGCGCTG TATCTGTGGT GCTTCTCGGC GTTCACGCTC
ACGTCGGCGC TGTGCGGGCT TGCTTGGTCC GCGCCATCGC TGATCGCGTT CCGCGTGCTG
CAAGGCGTGA GCGGCGGGCT GCTCGCGCCG ATGGCGCAGA TGATGATCGC GCGCGTCGCC
GGCCAGCAGA TGGCACGCGT GATCGGCTAC GCGGCCGTGC CCGTGCTGCT CGCGCCGATC
CTCGGCCCGG TCGTTGCGGG CGCGATCCTG CAGCACACGT CGTGGCGCTG GCTGTTTCTC
GTGAACCTGC CCGTCGGCGT ATTGGCACTC GCGCTGGCCG TGCGGTTCCT GCCCGGCGAC
CGCGACGACA CGCAGCCGCG CGAACTCGAC TGGGTCGGCC TGGCGCTGCT GTCACCGGGG
CTCGTGCTGT TCCTGTACGG CATCGAGCGG ATCAACGAAG CGCTCGGCAT CGCGGCGATC
GTCACGGCCG CGCTGTTGCT CGTGGCGTTC CTGCGCGTCG AAACGCGCAA GGGCGACCAC
GCGCTGATCG ACCTGGCGCT GTTTCGCGGC AAGGTGTTCG GCGCGGCCGC GTCGACGCAG
TTCCTGTCGA ACGGCGCGCT GTTCGCGGGC CAGATGCTGA TTCCGGTGTT CCTGATCCAG
GCGTGCGGCC GCACGCCCGG CGAGATGGGC TGGCTGCTCG CGCCGATGGG GCTCGGCATG
CTCGTCACCT ACCCGTCGAT GGGCGCGCTG ACGAGCCGGT TCGGCGTGCG CCGGCTGGCC
GCCGCCGGCG CGTTGCTCGC GCTGTTCGCG ACGCTGCCGT TCGTGTTCCT CGCGCTGACC
GGCTACGACC CATACCTGCT CGTGCCGGCG CTGTTCCTGC GCGGCATGGG CCAGAGCGCG
ATCGGCGCAC CGTCGATCTC CGCCGCGTAT GCGTCGGTCG AGCGCCGCAA CCTGCCGATG
GCGACCACCT CGCTCAATAT CGTGCAACGT CTCGGCGGCC CGACGTTCAC GACGGTCTGC
ACGCTGTTCC TCGCTTGGCG GCTGCAGGCC GAATCGGTGA CGAGCGGCGG CACGCAGGCC
AGCGCGTACG CGTGGGCCTT CGGCCTGCTT TGCGTGCTGC ACGCGGCGAG CTTCGTCACG
ACGCTGCGGC TGCCGTTGTG GTCGGCCGGT GCAGGCGGGA AACCTGCCGG CGCCGCGCGC
GCCGGTTCGC GCTGA
|
|---|
| Protein sequence | MSDQHARPTQ DHAAGRPDPS IWKVSAVAVL GSLLSQLDAT IVNVSLSSLA TDLHASLATI
QWVTSGYLLA LTLVLPLNGW LVDRIGAKAL YLWCFSAFTL TSALCGLAWS APSLIAFRVL
QGVSGGLLAP MAQMMIARVA GQQMARVIGY AAVPVLLAPI LGPVVAGAIL QHTSWRWLFL
VNLPVGVLAL ALAVRFLPGD RDDTQPRELD WVGLALLSPG LVLFLYGIER INEALGIAAI
VTAALLLVAF LRVETRKGDH ALIDLALFRG KVFGAAASTQ FLSNGALFAG QMLIPVFLIQ
ACGRTPGEMG WLLAPMGLGM LVTYPSMGAL TSRFGVRRLA AAGALLALFA TLPFVFLALT
GYDPYLLVPA LFLRGMGQSA IGAPSISAAY ASVERRNLPM ATTSLNIVQR LGGPTFTTVC
TLFLAWRLQA ESVTSGGTQA SAYAWAFGLL CVLHAASFVT TLRLPLWSAG AGGKPAGAAR
AGSR
|
|---|
| |