30 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
VEA_000033  CDS  NC_013457  35029  38085  +  3057  exonuclease SbcC  YP_003287185  decreased coverage  0.00466596  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_000034  CDS  NC_013457  38176  39090  -  915  transcriptional regulator LysR family protein  YP_003287186  decreased coverage  0.000511263  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_000055  CDS  NC_013457  61459  63090  -  1632  methyl-accepting chemotaxis protein  YP_003287208  decreased coverage  0.000458726  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_000129  CDS  NC_013457  145000  145662  +  663  transcriptional regulator  YP_003287282  decreased coverage  0.000000110935  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_000158  CDS  NC_013457  169200  171281  +  2082  TonB-dependent heme and hemoglobin receptor HutA  YP_003287311  decreased coverage  0.00497898  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_000188  CDS  NC_013457  201641  202660  -  1020  membrane protein TerC  YP_003287341  decreased coverage  0.0000121417  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_000189  CDS  NC_013457  203287  205023  -  1737  5'-nucleotidase  YP_003287342  decreased coverage  0.0000310598  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_000394  CDS  NC_013457  446559  448262  +  1704  acetolactate synthase catabolic  YP_003287547  decreased coverage  0.000407166  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_000498  CDS  NC_013457  597032  598084  -  1053  2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha  YP_003287649  decreased coverage  0.000027124  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_000499  CDS  NC_013457  598546  599538  +  993  outer membrane protein A precursor  YP_003287650  decreased coverage  0.0000000410155  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_000579  CDS  NC_013457  676529  677242  +  714  putative DNA-binding response regulator  YP_003287730  decreased coverage  0.00151616  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_000595  CDS  NC_013457  690100  691269  -  1170  D-alanyl-D-alanine carboxypeptidase  YP_003287746  decreased coverage  0.0000000867195  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_000711  CDS  NC_013457  826582  827652  -  1071  enoyl-[acyl-carrier-protein] reductase (FMN)  YP_003287862  decreased coverage  0.00491947  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_000755  CDS  NC_013457  868443  869423  -  981  outer membrane protein A precursor  YP_003287906  decreased coverage  0.000000475354  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_000826  CDS  NC_013457  951231  951659  +  429  hypothetical protein  YP_003287977  decreased coverage  0.00006699  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_000827  CDS  NC_013457  951726  952451  -  726  zn-dependent hydrolase  YP_003287978  decreased coverage  0.000173508  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_000828  CDS  NC_013457  952763  954685  +  1923  biosynthetic arginine decarboxylase  YP_003287979  decreased coverage  0.00030199  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_000829  CDS  NC_013457  954687  955607  +  921  agmatinase  YP_003287980  decreased coverage  0.000138178  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_000851  CDS  NC_013457  977105  977770  -  666  probable transcriptional regulator SyrB  YP_003288002  decreased coverage  0.00675785  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_000940  CDS  NC_013457  1071614  1072954  -  1341  Na+ driven multidrug efflux pump  YP_003288090  decreased coverage  0.000926882  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_001077  CDS  NC_013457  1225154  1226908  +  1755  hypothetical protein  YP_003288227  decreased coverage  0.00935089  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_001120  CDS  NC_013457  1286031  1286924  +  894  hypothetical protein  YP_003288270  decreased coverage  0.000000254312  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_001128  CDS  NC_013457  1294145  1295125  -  981  rhodanese domain protein  YP_003288278  decreased coverage  0.0000000331641  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_001333  CDS  NC_013457  1518995  1519900  -  906  hypothetical protein  YP_003288481  decreased coverage  0.0000132961  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_001349  CDS  NC_013457  1532713  1533174  +  462  transcriptional regulator LuxT  YP_003288497  decreased coverage  0.00000000649622  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_001350  CDS  NC_013457  1533366  1534148  -  783  ABC-type hemin transport system ATPase component  YP_003288498  decreased coverage  0.00000143522  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_001373  CDS  NC_013457  1554478  1554708  +  231  PAS factor  YP_003288521  decreased coverage  0.00000000135074  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_001374  CDS  NC_013457  1554791  1555168  -  378  4-carboxymuconolactone decarboxylase  YP_003288522  decreased coverage  0.00000000210016  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_001431  CDS  NC_013457  1623262  1624455  +  1194  multidrug resistance protein D  YP_003288579  decreased coverage  0.00000114311  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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VEA_001506  CDS  NC_013457  1698509  1699801  +  1293  ATP-dependent RNA helicase  YP_003288654  decreased coverage  0.000291883  n/a    Vibrio sp. Ex25  Bacteria 
 
 
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