Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_000940 |
Symbol | |
ID | 8559253 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013457 |
Strand | - |
Start bp | 1071614 |
End bp | 1072954 |
Gene Length | 1341 bp |
Protein Length | 446 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 646408611 |
Product | Na+ driven multidrug efflux pump |
Protein accession | YP_003288090 |
Protein GI | 262396237 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.000926882 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCTAAAA GCCAAAACAT CAACCAACGA ATGTCCATCG TGGCATTGGC TTGGCCGATT CTTGTCGAAA TTTTGCTACG GACGGCTTTA GGAACCAGTG ACGTGTTCAT GCTGAGTGGC TACTCAGACA AAGCGGTATC CGCTGTTGGT GTGATCACGC AGATTACCTT TTTCTTAATC ATCGTTTCGA CGTTTGTCAG CAGCGGAACG GGGATTTTGA TTGCCCAATA CAACGGCGCT GGGCGCGAGC AAGAGTCTGT GAACGTCGGC GTTGCAAGTA TTGCGCTGTC CGTGATTGTC GGTGCGTTCT TGAGTGTGAT TGCCGTGCTT GGCGCGATAT TCCTGCTCCC GTATTACGGT TTGGAGGCAC AAGTCGAGCA ATACGCACGT GAATATTTGC TGATCAGCGG AGCGATGACG TTCAACGTCA CCATAGGCAT AGTCTTTACG ACCATTCTGC GTAGCCATGG CTATTCACGC TCTCCAATGG TGGTGAACTT GATCTCGGGT GTGTTCAACA TCATTGGTAA CTATATTGCG CTTTACCAGC CATTCGGTTT ACCTGTGTAT GGTGTGCAAG GTGTAGCAAT AGCAACCGTC GTCAGCCAAG TCATCGGTAC GTTAATGTTA TGGTTTATTC TCGCTCGCAG CAGCATTGAA CTACCAATGT CGACCATGAA ACAAGTGCCC GCAGAAATTT ACAAAAAGAT CTTAAAAATC GGCGGTATGA ACGCGGGTGA AGTGCTGTCT TACAACGTGG CGCAAATCTG CATTGTGTAC TTTGTGGTGC AAATGGGGAC GGCATCGTTG GCGGCTTTCA CTTATGCGCA AAACATTGCC CGTTTCTCGT TTGCTTTCGC GTTGGCAATT GGTCAGGCAG CGCAAATTCA GACTGGTTAC TACATCGGTA AAGGTTGGGT GAGCAGCATT TTAAAACGTG TACAAATCTA CTTCTTAGTG GGATTTGTGG CATCAACGGC GGCAACCACA CTGATTTACC TGTTTAGAGA AGAGATTCTG CGCGTATTTA CCGATCAACC AGAAATACTC GCATTGGCAG GCTCGTTAGT CATGGGCTCA ATTTTGCTCG AAGCCGGACG TGTGTTTAAC CTGATTTTTA TCGCGGGGCT CAAAGGCGCG GGTGACATCA AGTTCCCAGT GCAAATGGGG ATTTTGAGTA TGTGGGGACT AGGCGTGCTT TTCTCTTACA TCTTTGGCAT CCACTTGGGT TATGGCGTTT TAGGGGCTTG GATGGCAATC GCACTCGATG AATGGGTACG TGGTATCATC ATGGCAAGGC GTTGGCGCTC TCAGGTGTGG ACCAAGTTTA AGGTGAGCTA A
|
Protein sequence | MPKSQNINQR MSIVALAWPI LVEILLRTAL GTSDVFMLSG YSDKAVSAVG VITQITFFLI IVSTFVSSGT GILIAQYNGA GREQESVNVG VASIALSVIV GAFLSVIAVL GAIFLLPYYG LEAQVEQYAR EYLLISGAMT FNVTIGIVFT TILRSHGYSR SPMVVNLISG VFNIIGNYIA LYQPFGLPVY GVQGVAIATV VSQVIGTLML WFILARSSIE LPMSTMKQVP AEIYKKILKI GGMNAGEVLS YNVAQICIVY FVVQMGTASL AAFTYAQNIA RFSFAFALAI GQAAQIQTGY YIGKGWVSSI LKRVQIYFLV GFVASTAATT LIYLFREEIL RVFTDQPEIL ALAGSLVMGS ILLEAGRVFN LIFIAGLKGA GDIKFPVQMG ILSMWGLGVL FSYIFGIHLG YGVLGAWMAI ALDEWVRGII MARRWRSQVW TKFKVS
|
| |