Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_000828 |
Symbol | |
ID | 8559134 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013457 |
Strand | + |
Start bp | 952763 |
End bp | 954685 |
Gene Length | 1923 bp |
Protein Length | 640 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 646408493 |
Product | biosynthetic arginine decarboxylase |
Protein accession | YP_003287979 |
Protein GI | 262396126 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00030199 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAGAATCG AGTTGGAAAA AGCAACTAAA TTAGACCGCA TCCGCGCGGA CTACAACGTT CACTACTGGA GCCAAGGTTT CTACGGTATT GATGACCAAG GCGAGGTTTA CGTATCACCT CGTAGTGATC GTGCACATCA AATCCCTTTC AGTGCCATTG TAAACGAGCT AGAAGCGAAG CAGTTAAATC TGCCTGTATT AGTGCGCTTC CCGCAAATCG TGCACCAACG TGTGCATGGA ATTTGCCACG CTTTCAACCA AGCAATTGAA GAATACCAAT ATCCAAACAA ATACCTGTTG GTGTACCCAA TTAAAGTAAA CCAACAACGT GAAGTGGTGG ATGAAATTCT AGCGAGCCAA GCTCAACTAG AAACCAAACA GCTTGGTCTT GAAGCGGGTA GCAAGCCAGA ATTGTTGGCA GTACTTGCAT TGGCTCAACA AGGCAGCTCC GTGATCGTGT GTAACGGCTA CAAAGACCGT GAGTATGTGC GTCTTGCACT GATCGGTGAA AAGCTGGGCC ACAAAGTATT CATCGTACTA GAGAAGCTTT CTGAGCTGGA TCTGGTGCTA GAAGAAGCGA AAAGCTTGGG CGTAAAACCG CGCCTTGGTT TGCGCATTCG CCTCGCCTCT CAAGGTGCAG GGAAATGGCA AGCAAGTGGC GGTGAAAAAT CGAAGTTCGG TTTGTCTGCA TCGCAAGTGC TTAGCGTTAT TGAACGTCTG AAACGCGAAG GCAGCCTAGA TGCGATGCAA CTGGTTCACT TCCACCTGGG TTCACAGATG GCAAACATCC GTGACGTACG TAATGGTGTG AATGAGTCTG CACGTTTCTA CTGCGAACTG CGCGCACTGG GTGCAAACAT CGAATACTTC GATGTGGGCG GCGGTTTGGC AGTCGACTAC GACGGCACAC GCAGCCAATC ATCGAATTCG ATGAACTACG GCCTTGCAGA GTACGCACGT AATATCGTCA ACACAGTGGG CGACGTGTGT CAGCAATACG AACAACCGAT GCCAGTGATC ATTTCAGAAT CCGGTCGTTC ACTGACAGCG CACCACGCTG TATTGATTTC TAACGTAATT GGTACAGAAA CGTACCAACC GGAAGAAGTG TATGAACTTG GCGCAGATGC TCCACTTTTG CTACAAAACA TGTGGCGAAA CTGGGAAAAC TTACAAGATG GTACAGACGC TCGTGCGTTA ATTGAGATCT ACAATGATAC CCAAAGTGAT TTGGCAGAGG TACACTCTCA ATTCGCAACT GGTGTGCTTA ACTTGGAGCA ACGTGCGTGG GCAGAGCAAC TGTCACTGCG CATTTACTTC GAACTAAGCC GCAAGATGAG CACTAAAAAT CGCTTCCACC GTCCGATTCT GGACGAGTTG AGTGAACGTC TTGCAGATAA GTTCTTCGTG AACTTTTCTC TCTTCCAATC TCTACCAGAT GCTTGGGGTA TTGATCAGGT GTTCCCTGTT CTGCCACTTT CTGGTCTTGG CGATGCGGAA GAGCGTCGTG CTGTGATGTT GGACATCACC TGTGACTCTG ATGGCGCGAT CGATCACTAC GTTGATGGTC AAGGCATCGA GAGCACGCTA CCTGTACCAG CTTGGAGCAA AGACAAACCG TACCTAATGG GCTTTTTCCT AGTAGGCGCA TACCAAGAAA TCCTTGGTGA CATGCACAAC CTATTTGGTG ACACCCACAG TGCAGTAGTC AATGTTGATG AACACGGTCA ATTTGAGATC AGTTATATCA ATGAAGGTGA TAGTGTAGAA GACATGATGC GCTACGTTCA TATCGACGTG GATGCGATTC GTGACAATTA CAAACAATTG GTTTCCCAAC GAGTTGAAGC CAATGAACAA GCACAAATCC TAGCAGAACT AGAACAAGGT CTAGCGGGAT ACACCTATTT AGAGGACTTC TGA
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Protein sequence | MRIELEKATK LDRIRADYNV HYWSQGFYGI DDQGEVYVSP RSDRAHQIPF SAIVNELEAK QLNLPVLVRF PQIVHQRVHG ICHAFNQAIE EYQYPNKYLL VYPIKVNQQR EVVDEILASQ AQLETKQLGL EAGSKPELLA VLALAQQGSS VIVCNGYKDR EYVRLALIGE KLGHKVFIVL EKLSELDLVL EEAKSLGVKP RLGLRIRLAS QGAGKWQASG GEKSKFGLSA SQVLSVIERL KREGSLDAMQ LVHFHLGSQM ANIRDVRNGV NESARFYCEL RALGANIEYF DVGGGLAVDY DGTRSQSSNS MNYGLAEYAR NIVNTVGDVC QQYEQPMPVI ISESGRSLTA HHAVLISNVI GTETYQPEEV YELGADAPLL LQNMWRNWEN LQDGTDARAL IEIYNDTQSD LAEVHSQFAT GVLNLEQRAW AEQLSLRIYF ELSRKMSTKN RFHRPILDEL SERLADKFFV NFSLFQSLPD AWGIDQVFPV LPLSGLGDAE ERRAVMLDIT CDSDGAIDHY VDGQGIESTL PVPAWSKDKP YLMGFFLVGA YQEILGDMHN LFGDTHSAVV NVDEHGQFEI SYINEGDSVE DMMRYVHIDV DAIRDNYKQL VSQRVEANEQ AQILAELEQG LAGYTYLEDF
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