Gene VEA_000828 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVEA_000828 
Symbol 
ID8559134 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio sp. Ex25 
KingdomBacteria 
Replicon accessionNC_013457 
Strand
Start bp952763 
End bp954685 
Gene Length1923 bp 
Protein Length640 aa 
Translation table11 
GC content48% 
IMG OID646408493 
Productbiosynthetic arginine decarboxylase 
Protein accessionYP_003287979 
Protein GI262396126 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1166] Arginine decarboxylase (spermidine biosynthesis) 
TIGRFAM ID[TIGR01273] arginine decarboxylase, biosynthetic 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00030199 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGAATCG AGTTGGAAAA AGCAACTAAA TTAGACCGCA TCCGCGCGGA CTACAACGTT 
CACTACTGGA GCCAAGGTTT CTACGGTATT GATGACCAAG GCGAGGTTTA CGTATCACCT
CGTAGTGATC GTGCACATCA AATCCCTTTC AGTGCCATTG TAAACGAGCT AGAAGCGAAG
CAGTTAAATC TGCCTGTATT AGTGCGCTTC CCGCAAATCG TGCACCAACG TGTGCATGGA
ATTTGCCACG CTTTCAACCA AGCAATTGAA GAATACCAAT ATCCAAACAA ATACCTGTTG
GTGTACCCAA TTAAAGTAAA CCAACAACGT GAAGTGGTGG ATGAAATTCT AGCGAGCCAA
GCTCAACTAG AAACCAAACA GCTTGGTCTT GAAGCGGGTA GCAAGCCAGA ATTGTTGGCA
GTACTTGCAT TGGCTCAACA AGGCAGCTCC GTGATCGTGT GTAACGGCTA CAAAGACCGT
GAGTATGTGC GTCTTGCACT GATCGGTGAA AAGCTGGGCC ACAAAGTATT CATCGTACTA
GAGAAGCTTT CTGAGCTGGA TCTGGTGCTA GAAGAAGCGA AAAGCTTGGG CGTAAAACCG
CGCCTTGGTT TGCGCATTCG CCTCGCCTCT CAAGGTGCAG GGAAATGGCA AGCAAGTGGC
GGTGAAAAAT CGAAGTTCGG TTTGTCTGCA TCGCAAGTGC TTAGCGTTAT TGAACGTCTG
AAACGCGAAG GCAGCCTAGA TGCGATGCAA CTGGTTCACT TCCACCTGGG TTCACAGATG
GCAAACATCC GTGACGTACG TAATGGTGTG AATGAGTCTG CACGTTTCTA CTGCGAACTG
CGCGCACTGG GTGCAAACAT CGAATACTTC GATGTGGGCG GCGGTTTGGC AGTCGACTAC
GACGGCACAC GCAGCCAATC ATCGAATTCG ATGAACTACG GCCTTGCAGA GTACGCACGT
AATATCGTCA ACACAGTGGG CGACGTGTGT CAGCAATACG AACAACCGAT GCCAGTGATC
ATTTCAGAAT CCGGTCGTTC ACTGACAGCG CACCACGCTG TATTGATTTC TAACGTAATT
GGTACAGAAA CGTACCAACC GGAAGAAGTG TATGAACTTG GCGCAGATGC TCCACTTTTG
CTACAAAACA TGTGGCGAAA CTGGGAAAAC TTACAAGATG GTACAGACGC TCGTGCGTTA
ATTGAGATCT ACAATGATAC CCAAAGTGAT TTGGCAGAGG TACACTCTCA ATTCGCAACT
GGTGTGCTTA ACTTGGAGCA ACGTGCGTGG GCAGAGCAAC TGTCACTGCG CATTTACTTC
GAACTAAGCC GCAAGATGAG CACTAAAAAT CGCTTCCACC GTCCGATTCT GGACGAGTTG
AGTGAACGTC TTGCAGATAA GTTCTTCGTG AACTTTTCTC TCTTCCAATC TCTACCAGAT
GCTTGGGGTA TTGATCAGGT GTTCCCTGTT CTGCCACTTT CTGGTCTTGG CGATGCGGAA
GAGCGTCGTG CTGTGATGTT GGACATCACC TGTGACTCTG ATGGCGCGAT CGATCACTAC
GTTGATGGTC AAGGCATCGA GAGCACGCTA CCTGTACCAG CTTGGAGCAA AGACAAACCG
TACCTAATGG GCTTTTTCCT AGTAGGCGCA TACCAAGAAA TCCTTGGTGA CATGCACAAC
CTATTTGGTG ACACCCACAG TGCAGTAGTC AATGTTGATG AACACGGTCA ATTTGAGATC
AGTTATATCA ATGAAGGTGA TAGTGTAGAA GACATGATGC GCTACGTTCA TATCGACGTG
GATGCGATTC GTGACAATTA CAAACAATTG GTTTCCCAAC GAGTTGAAGC CAATGAACAA
GCACAAATCC TAGCAGAACT AGAACAAGGT CTAGCGGGAT ACACCTATTT AGAGGACTTC
TGA
 
Protein sequence
MRIELEKATK LDRIRADYNV HYWSQGFYGI DDQGEVYVSP RSDRAHQIPF SAIVNELEAK 
QLNLPVLVRF PQIVHQRVHG ICHAFNQAIE EYQYPNKYLL VYPIKVNQQR EVVDEILASQ
AQLETKQLGL EAGSKPELLA VLALAQQGSS VIVCNGYKDR EYVRLALIGE KLGHKVFIVL
EKLSELDLVL EEAKSLGVKP RLGLRIRLAS QGAGKWQASG GEKSKFGLSA SQVLSVIERL
KREGSLDAMQ LVHFHLGSQM ANIRDVRNGV NESARFYCEL RALGANIEYF DVGGGLAVDY
DGTRSQSSNS MNYGLAEYAR NIVNTVGDVC QQYEQPMPVI ISESGRSLTA HHAVLISNVI
GTETYQPEEV YELGADAPLL LQNMWRNWEN LQDGTDARAL IEIYNDTQSD LAEVHSQFAT
GVLNLEQRAW AEQLSLRIYF ELSRKMSTKN RFHRPILDEL SERLADKFFV NFSLFQSLPD
AWGIDQVFPV LPLSGLGDAE ERRAVMLDIT CDSDGAIDHY VDGQGIESTL PVPAWSKDKP
YLMGFFLVGA YQEILGDMHN LFGDTHSAVV NVDEHGQFEI SYINEGDSVE DMMRYVHIDV
DAIRDNYKQL VSQRVEANEQ AQILAELEQG LAGYTYLEDF