| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_000033 |
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| Symbol | |
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| ID | 8558331 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013457 |
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| Strand | + |
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| Start bp | 35029 |
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| End bp | 38085 |
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| Gene Length | 3057 bp |
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| Protein Length | 1018 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646407691 |
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| Product | exonuclease SbcC |
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| Protein accession | YP_003287185 |
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| Protein GI | 262395332 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0419] ATPase involved in DNA repair |
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| TIGRFAM ID | [TIGR00618] exonuclease SbcC |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00466596 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACCAA TTAAACTTAC CATGCAAGCC TTTGGTCCGT TTGCAAAAAC CGAAGTCATT
GACTTTGAAA AGCTTGGCCG TAACCCTCTG TTTTTGATTA ATGGTCCTAC AGGCTCAGGT
AAAACGTCGA TCTTAGATGC CATTTGCTTT GCCCTTTACG GTGAAACTAC CGGTAATGAG
CGGCAAGGCA TCCAGATGCG ATGTGACTTA TCGGCGCAAG ACTTACCAAC CGAAGTCGTT
CTAGAATTTT CGTTACATGG CAAACAATAC CGAGTTGTGC GATCTCCAGA GCAGGAAGCG
CCCAAAGCGC GTGGTGAAGG GATGACGGTA AAAAAGCACA CTGCGGCTCT TTATGAACTC
GGCGAGACCG AAAAGCTCAT CACTAGCAAG ACGACTCAAG TTAAAACAGA AGTGAGCAAT
ATTATTGGTT TGAATGAAAC GCAATTTCGC CAAGTAATGG TATTGCCTCA AGGAAAATTC
CGGGAGCTGT TGCTTGCTAG TTCTAAAGAG CGCGAAGAAA TTTTTGGTCA GCTCTTTCAA
ACGGACATAT ATAAAAAAAT TGAGTACGCG CTCAAAGATA AAGCGAGCGC AATCAGTAAA
GCGAAAGATG AATTTGATAA TCAAATTCGA GGCGCTTTAC AAGTTGCAGG AGTGAGTTCA
GAGCAGGAAT TATTACACCA GCTTGAACAA GCAACTGAGC AGCTAGAGGT CGATAGAAAG
AAAGAACAAG CTTCGTTAGA TAAGCTAAAT GTTGCTAAAT CTGAATTGCA AAAAGCGGAA
ACTATTAATG GAGAGTTTTC GAAACGAGAG CAAGCAGAAA ACGCACTCAA GCTGCATCTA
GAACACTCAG ACTCGATAAA AGTTCGTCAA CAGCAATTAG AAAATGCTAA AAATGCCAAT
AAGATAGAAT TACCCTACGT CGCATTACAA AATGCAAAAA CTCAAACTCA AGAGCTCAGA
CAAAAAATCG TAGCTTTGAA AGAGAGCCTT GATAAAGCCA ATGCTGTTAC GAAAGAAAAA
GAAAACTTGC AGCAAAGTGC AAAAGAAGCC GCGGCAAAAG TCCCACAGTT AACGCAACTG
CAGTATCAAC TTGAAAGCAT GAAAGACAAG TTGGTTGAAA AAGCCAACTT GGAAAGAAAA
ATAACGGCAG GTCATCAACA AAAGCAACAA TTTGAAGCAA CGTTAAAACA GTACATAGAG
CTGAAAGACA AGTTGGCGTT TCAGGCGCAA CAGGGCCAGA AAGATCTAGA GCAAGCCCGA
GTAGATGTTG CGCTTGTTGG CAGCATCGAT GCGGAAATAA AACAAAAACA ACGACTACTA
CAGGATCTAC AAAAGCTGCA TGGTCTTACT TTGGAACTCT CTAAACTCAC GGCGTTAACC
GTAAGCAAGC AGCAGTCATT ACAGGAAGCC AGTCAGCGCT ATATGCAGTG TCAACAAGCC
GCTGATACGA TAGAGCTTAA GTGGCACAAC GCTCAAGCGG CAGTATTAGC GCAGCGACTA
AAGGCAGGTG AAGCATGTCC GGTATGTGGC AGCCAAGCGC ATCCTAACCT TGCGACGTTT
GTTGAAGAAG TCGTTACAAA AGAGCAAGTT CAGGCTGCCA GAGTGAAAGA AAGAGAAGCT
CAAACCTCAC TGAACCAGCT AAGTAATCAG CTAGAACAAC ATAACGTTGT TATTATTCAG
CATCAGAATC AAATCGACCA GTTGAAAGAA GAGCTTGGTG AGCATGCAGC GTCTGAGATC
TCGACGGTTC AAACTGAGTT GCAGGCGCTT AATGATCAAC TTCTACGTCT ACAATCTATT
GATATTGAAA AGCTAGAAAA GAACGTTGAA CAGCTTAATC AACGCTGCTT AGTGGGTGAA
AATAAAATTC ATGAGCTGCA GAATCAAATG GCGGCAAATG AATCAACCGT TCAAGCAAAC
CAAGAACACT TGACTCAATT ACAAGCTTCC ATTGATCCGA AATACAGTTC CGTTGATGCG
CTTGAGCGTG ACATTTCGCT CACAAAAGAG CAAATTCTGA CCTTGAATAC AGGTTTAGAA
AAGGCGCAAA ACGCTTTGCA GCAAGCGGTA TTAGCGCAAT CGAATGCTGA AAGTCAGTTA
GTGACGAACA AGCAGTGGCT ATCTGAGTCA GAACAAAAGC TTAGCCAAGC AGAATTAGCG
TGGAATGAGG CATTACAGGC GAGTAAATTT GAGGATGAAA GCAGTTATCT AAATAGCAGA
GTGACAGATG ATGAGCTTCA AGCGTGGCAG AAAGAAATAG ACAACTTCAA ACAGACACAA
ACCAAGCTTG AACAAACACT ACATGATTTA AACCATGCAT TGAAAGCGCT TGAAAGACCG
GACTTGGATT CGCTTAACGA CAGCTTAACC ACTCTGCAGG CGCAGTATAT TGAAGTAAGG
AATCAGCTCG ATACCACGCG CTCAACCTTT GAGCGAATTG AAAAAGTTCG TAAAGATATT
GCTACGCTGC ATGAGAAAAA TAGCAAGTTA GAAGAAGAGT ACAAAGTGTT TGGTACGTTA
TACGACGTTG CCAGCGGTAA AACAGGCAGC AGGGTTAGCC TACATCGCTT TGTTCTTGGT
GTACTGTTGG ATGATGTTTT AATTCAGGCC TCTCAACGTT TAAGCCTCAT GAGTAAAGGG
CGCTATATTC TTGCTCGAAA AACAGAGGGC TTCAAAGGCG CTGCGGGTCG CGGCTTAGAT
TTAATGGTTG AAGATGGTTA CACAGGAAAA ACACGTGATG TTGCGACACT TTCCGGTGGT
GAATCGTTTA TGGCAGCGCT TGCTTTGGCG CTTGGCTTGT CGGATGTTGT GCAATCCTAT
AGTGGTGGTA TCCGTTTAGA CACTTTATTC ATTGATGAGG GGTTCGGTAG TTTAGACCCA
GAATCTTTGG ATCTCGCCAT TCAAACGCTA GTGGATTTGC AACAGACTGG ACGCATGATC
GGTGTTATTT CTCACGTTTC TGAGTTAAAA GAGCAAATGG CGCAGAGGGT TGATGTTGAA
CCATCAAGAG TCGGTTCGAC AGTATCGGTC AAATCTCAAC TAACTAGGAC AGTATAA
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| Protein sequence | MKPIKLTMQA FGPFAKTEVI DFEKLGRNPL FLINGPTGSG KTSILDAICF ALYGETTGNE
RQGIQMRCDL SAQDLPTEVV LEFSLHGKQY RVVRSPEQEA PKARGEGMTV KKHTAALYEL
GETEKLITSK TTQVKTEVSN IIGLNETQFR QVMVLPQGKF RELLLASSKE REEIFGQLFQ
TDIYKKIEYA LKDKASAISK AKDEFDNQIR GALQVAGVSS EQELLHQLEQ ATEQLEVDRK
KEQASLDKLN VAKSELQKAE TINGEFSKRE QAENALKLHL EHSDSIKVRQ QQLENAKNAN
KIELPYVALQ NAKTQTQELR QKIVALKESL DKANAVTKEK ENLQQSAKEA AAKVPQLTQL
QYQLESMKDK LVEKANLERK ITAGHQQKQQ FEATLKQYIE LKDKLAFQAQ QGQKDLEQAR
VDVALVGSID AEIKQKQRLL QDLQKLHGLT LELSKLTALT VSKQQSLQEA SQRYMQCQQA
ADTIELKWHN AQAAVLAQRL KAGEACPVCG SQAHPNLATF VEEVVTKEQV QAARVKEREA
QTSLNQLSNQ LEQHNVVIIQ HQNQIDQLKE ELGEHAASEI STVQTELQAL NDQLLRLQSI
DIEKLEKNVE QLNQRCLVGE NKIHELQNQM AANESTVQAN QEHLTQLQAS IDPKYSSVDA
LERDISLTKE QILTLNTGLE KAQNALQQAV LAQSNAESQL VTNKQWLSES EQKLSQAELA
WNEALQASKF EDESSYLNSR VTDDELQAWQ KEIDNFKQTQ TKLEQTLHDL NHALKALERP
DLDSLNDSLT TLQAQYIEVR NQLDTTRSTF ERIEKVRKDI ATLHEKNSKL EEEYKVFGTL
YDVASGKTGS RVSLHRFVLG VLLDDVLIQA SQRLSLMSKG RYILARKTEG FKGAAGRGLD
LMVEDGYTGK TRDVATLSGG ESFMAALALA LGLSDVVQSY SGGIRLDTLF IDEGFGSLDP
ESLDLAIQTL VDLQQTGRMI GVISHVSELK EQMAQRVDVE PSRVGSTVSV KSQLTRTV
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