More than 300 homologs were found in PanDaTox collection
for query gene Shewmr7_1620 on replicon NC_008322
Organism: Shewanella sp. MR-7



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008322  Shewmr7_1620  histone family protein DNA-binding protein  100 
 
 
91 aa  182  1.0000000000000001e-45  Shewanella sp. MR-7  Bacteria  normal  0.628281  normal  0.306409 
 
 
-
 
NC_008321  Shewmr4_1550  histone family protein DNA-binding protein  97.8 
 
 
91 aa  180  7e-45  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000495364  normal 
 
 
-
 
NC_008577  Shewana3_1615  histone family protein DNA-binding protein  95.6 
 
 
91 aa  178  2e-44  Shewanella sp. ANA-3  Bacteria  normal  0.193087  normal  0.430163 
 
 
-
 
NC_004347  SO_1863  HU family DNA-binding protein  95.6 
 
 
91 aa  175  2e-43  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_2523  histone family protein DNA-binding protein  82.22 
 
 
91 aa  156  9e-38  Shewanella baltica OS223  Bacteria  normal  0.244531  normal  0.459813 
 
 
-
 
NC_009052  Sbal_1762  histone family protein DNA-binding protein  82.22 
 
 
91 aa  156  1e-37  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1755  histone family protein DNA-binding protein  82.22 
 
 
91 aa  156  1e-37  Shewanella baltica OS185  Bacteria  normal  0.217533  n/a   
 
 
-
 
NC_009997  Sbal195_1799  histone family protein DNA-binding protein  82.22 
 
 
91 aa  156  1e-37  Shewanella baltica OS195  Bacteria  normal  0.124697  normal  0.675776 
 
 
-
 
NC_008345  Sfri_1439  histone family protein DNA-binding protein  63.33 
 
 
91 aa  118  3e-26  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1611  HU family DNA-binding protein  60.67 
 
 
91 aa  107  8.000000000000001e-23  Shewanella amazonensis SB2B  Bacteria  normal  0.0329603  normal 
 
 
-
 
NC_008228  Patl_3133  histone-like DNA-binding protein  50 
 
 
90 aa  90.9  5e-18  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.0000000045924  n/a   
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  46.67 
 
 
90 aa  88.6  2e-17  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
NC_009831  Ssed_1544  histone family protein DNA-binding protein  44.44 
 
 
90 aa  86.7  1e-16  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.000000007734  hitchhiker  0.000745392 
 
 
-
 
NC_010506  Swoo_3110  histone family protein DNA-binding protein  43.33 
 
 
90 aa  86.3  1e-16  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000105676  hitchhiker  0.00000299463 
 
 
-
 
NC_009092  Shew_2505  histone family protein DNA-binding protein  43.33 
 
 
90 aa  86.3  1e-16  Shewanella loihica PV-4  Bacteria  hitchhiker  0.0000000791734  normal  0.581146 
 
 
-
 
NC_007954  Sden_1500  histone-like DNA-binding protein  55.56 
 
 
94 aa  86.3  1e-16  Shewanella denitrificans OS217  Bacteria  normal  0.909025  n/a   
 
 
-
 
NC_009901  Spea_2678  histone family protein DNA-binding protein  44.44 
 
 
90 aa  85.9  2e-16  Shewanella pealeana ATCC 700345  Bacteria  unclonable  0.0000000000589622  n/a   
 
 
-
 
NC_009052  Sbal_1607  histone family protein DNA-binding protein  44.44 
 
 
90 aa  85.1  3e-16  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000000022491  n/a   
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  44.44 
 
 
90 aa  85.1  3e-16  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  44.44 
 
 
90 aa  85.1  3e-16  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_008321  Shewmr4_2492  histone family protein DNA-binding protein  44.44 
 
 
90 aa  85.1  3e-16  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000348442  normal  0.0842071 
 
 
-
 
NC_008322  Shewmr7_2560  histone family protein DNA-binding protein  44.44 
 
 
90 aa  85.1  3e-16  Shewanella sp. MR-7  Bacteria  unclonable  0.000000135506  normal  0.0536414 
 
 
-
 
NC_008345  Sfri_2593  histone family protein DNA-binding protein  43.33 
 
 
91 aa  85.1  3e-16  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.0000000173721  n/a   
 
 
-
 
NC_011663  Sbal223_2747  histone family protein DNA-binding protein  44.44 
 
 
90 aa  85.1  3e-16  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000000276504  normal  0.581764 
 
 
-
 
NC_009997  Sbal195_1630  histone family protein DNA-binding protein  44.44 
 
 
90 aa  85.1  3e-16  Shewanella baltica OS195  Bacteria  unclonable  0.0000000159632  normal 
 
 
-
 
NC_009438  Sputcn32_1493  histone family protein DNA-binding protein  44.44 
 
 
90 aa  85.1  3e-16  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000000388309  n/a   
 
 
-
 
NC_003910  CPS_3781  HU family DNA-binding protein  45.56 
 
 
90 aa  84  7e-16  Colwellia psychrerythraea 34H  Bacteria  hitchhiker  0.0095051  n/a   
 
 
-
 
NC_007954  Sden_2492  histone-like DNA-binding protein  42.22 
 
 
90 aa  83.6  8e-16  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00401844  n/a   
 
 
-
 
NC_008577  Shewana3_2658  histone family protein DNA-binding protein  43.33 
 
 
90 aa  83.6  9e-16  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000180426  normal  0.730265 
 
 
-
 
NC_010717  PXO_02474  DNA-binding protein HU  42.22 
 
 
90 aa  83.6  0.000000000000001  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0219  histone family protein DNA-binding protein  43.82 
 
 
96 aa  83.6  0.000000000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.132966  normal 
 
 
-
 
NC_011080  SNSL254_A0500  transcriptional regulator HU subunit beta  43.33 
 
 
90 aa  82.4  0.000000000000002  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.332585  normal  0.0268714 
 
 
-
 
NC_009380  Strop_4159  histone family protein DNA-binding protein  41.11 
 
 
91 aa  82  0.000000000000002  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A0510  transcriptional regulator HU subunit beta  43.33 
 
 
90 aa  82.4  0.000000000000002  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0507646  normal 
 
 
-
 
NC_011149  SeAg_B0491  transcriptional regulator HU subunit beta  43.33 
 
 
90 aa  82.4  0.000000000000002  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0126716  n/a   
 
 
-
 
NC_011083  SeHA_C0554  transcriptional regulator HU subunit beta  43.33 
 
 
90 aa  82.4  0.000000000000002  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  hitchhiker  0.00736621  normal 
 
 
-
 
NC_009654  Mmwyl1_1726  histone family protein DNA-binding protein  44.44 
 
 
90 aa  82.4  0.000000000000002  Marinomonas sp. MWYL1  Bacteria  unclonable  0.00000000326644  hitchhiker  0.00672024 
 
 
-
 
NC_011205  SeD_A0493  transcriptional regulator HU subunit beta  43.33 
 
 
90 aa  82.4  0.000000000000002  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.107938  normal 
 
 
-
 
CP001509  ECD_00392  HU, DNA-binding transcriptional regulator, beta subunit  43.33 
 
 
90 aa  82  0.000000000000003  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3169  histone family protein DNA-binding protein  43.33 
 
 
90 aa  82  0.000000000000003  Escherichia coli DH1  Bacteria  hitchhiker  0.000005828  n/a   
 
 
-
 
NC_012892  B21_00396  hypothetical protein  43.33 
 
 
90 aa  82  0.000000000000003  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A0517  transcriptional regulator HU subunit beta  43.33 
 
 
90 aa  82  0.000000000000003  Escherichia coli HS  Bacteria  hitchhiker  0.0000000000441181  n/a   
 
 
-
 
NC_010658  SbBS512_E0363  transcriptional regulator HU subunit beta  43.33 
 
 
90 aa  82  0.000000000000003  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.00017145  n/a   
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  41.11 
 
 
90 aa  81.6  0.000000000000003  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_010468  EcolC_3192  transcriptional regulator HU subunit beta  43.33 
 
 
90 aa  82  0.000000000000003  Escherichia coli ATCC 8739  Bacteria  normal  0.0216859  hitchhiker  0.00242013 
 
 
-
 
NC_011353  ECH74115_0526  transcriptional regulator HU subunit beta  43.33 
 
 
90 aa  82  0.000000000000003  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00026983  normal  0.698185 
 
 
-
 
NC_010498  EcSMS35_0483  transcriptional regulator HU subunit beta  43.33 
 
 
90 aa  82  0.000000000000003  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.000219434  normal 
 
 
-
 
NC_009801  EcE24377A_0476  transcriptional regulator HU subunit beta  43.33 
 
 
90 aa  82  0.000000000000003  Escherichia coli E24377A  Bacteria  hitchhiker  0.000220916  n/a   
 
 
-
 
NC_011658  BCAH187_A2477  DNA-binding protein HU  46.07 
 
 
90 aa  80.9  0.000000000000006  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_2407  DNA-binding protein HU  46.07 
 
 
90 aa  80.9  0.000000000000006  Bacillus cereus ATCC 10987  Bacteria  normal  0.020348  n/a   
 
 
-
 
NC_005945  BAS2213  DNA-binding protein HU  46.07 
 
 
90 aa  80.9  0.000000000000006  Bacillus anthracis str. Sterne  Bacteria  normal  0.519209  n/a   
 
 
-
 
NC_005957  BT9727_2152  DNA-binding protein HU  46.07 
 
 
90 aa  80.9  0.000000000000006  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0274093  n/a   
 
 
-
 
NC_006274  BCZK2136  DNA-binding protein HU  46.07 
 
 
90 aa  80.9  0.000000000000006  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_2395  DNA-binding protein HU  46.07 
 
 
90 aa  80.9  0.000000000000006  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007530  GBAA_2377  DNA-binding protein HU  46.07 
 
 
90 aa  80.9  0.000000000000006  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A2342  DNA-binding protein HU  46.07 
 
 
90 aa  80.1  0.00000000000001  Bacillus cereus B4264  Bacteria  normal  0.868034  n/a   
 
 
-
 
NC_011773  BCAH820_3740  DNA-binding protein HU  46.07 
 
 
90 aa  80.1  0.00000000000001  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000145695 
 
 
-
 
NC_003909  BCE_3756  DNA-binding protein HU  46.07 
 
 
90 aa  80.1  0.00000000000001  Bacillus cereus ATCC 10987  Bacteria  unclonable  0.0000000000231467  n/a   
 
 
-
 
NC_011772  BCG9842_B1474  DNA-binding protein HU  46.07 
 
 
90 aa  80.1  0.00000000000001  Bacillus cereus G9842  Bacteria  unclonable  0.000000000112809  hitchhiker  0.00000484208 
 
 
-
 
NC_004578  PSPTO_3723  DNA-binding protein HU-beta  42.22 
 
 
90 aa  79.3  0.00000000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.612497  n/a   
 
 
-
 
NC_005945  BAS3574  DNA-binding protein HU  46.07 
 
 
90 aa  80.1  0.00000000000001  Bacillus anthracis str. Sterne  Bacteria  decreased coverage  0.0000000000204463  n/a   
 
 
-
 
NC_005957  BT9727_3473  DNA-binding protein HU  46.07 
 
 
90 aa  80.1  0.00000000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  1.59147e-20  n/a   
 
 
-
 
NC_006274  BCZK3486  DNA-binding protein HU  46.07 
 
 
90 aa  80.1  0.00000000000001  Bacillus cereus E33L  Bacteria  unclonable  0.000000000000148823  n/a   
 
 
-
 
NC_007005  Psyr_1750  histone-like DNA-binding protein  42.22 
 
 
90 aa  79.3  0.00000000000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.519537  normal  0.0235988 
 
 
-
 
NC_007492  Pfl01_3694  nucleoid protein HU beta subunit  42.22 
 
 
90 aa  79.3  0.00000000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.566059  normal 
 
 
-
 
NC_011658  BCAH187_A3778  DNA-binding protein HU  46.07 
 
 
90 aa  80.1  0.00000000000001  Bacillus cereus AH187  Bacteria  unclonable  0.000000000704337  n/a   
 
 
-
 
NC_007530  GBAA_3858  DNA-binding protein HU  46.07 
 
 
90 aa  80.1  0.00000000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  unclonable  0.0000000000000587043  n/a   
 
 
-
 
NC_011772  BCG9842_B2983  DNA-binding protein HU  46.07 
 
 
90 aa  80.1  0.00000000000001  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A3827  DNA-binding protein HU  46.07 
 
 
90 aa  80.1  0.00000000000001  Bacillus cereus B4264  Bacteria  unclonable  0.00000818253  n/a   
 
 
-
 
NC_013421  Pecwa_3261  transcriptional regulator HU subunit beta  42.22 
 
 
90 aa  79.7  0.00000000000001  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_1098  histone family protein DNA-binding protein  40 
 
 
101 aa  79.7  0.00000000000001  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00970005  hitchhiker  0.00000236625 
 
 
-
 
NC_009457  VC0395_A1509  DNA-binding protein HU-beta  43.33 
 
 
90 aa  79.3  0.00000000000001  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000000490467  n/a   
 
 
-
 
NC_009674  Bcer98_1763  histone family protein DNA-binding protein  46.07 
 
 
90 aa  79.7  0.00000000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.203917  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2184  histone family protein DNA-binding protein  44.94 
 
 
90 aa  79.3  0.00000000000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.170143  n/a   
 
 
-
 
NC_009674  Bcer98_2403  histone family protein DNA-binding protein  46.07 
 
 
90 aa  79.7  0.00000000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  unclonable  0.00000000237544  n/a   
 
 
-
 
NC_012917  PC1_1051  transcriptional regulator HU subunit beta  42.22 
 
 
90 aa  79.7  0.00000000000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.593082  n/a   
 
 
-
 
NC_011901  Tgr7_0942  histone family protein DNA-binding protein  44.44 
 
 
90 aa  79.3  0.00000000000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3494  histone family protein DNA-binding protein  44.94 
 
 
90 aa  79  0.00000000000002  Bacillus weihenstephanensis KBAB4  Bacteria  decreased coverage  0.00000668206  n/a   
 
 
-
 
NC_009783  VIBHAR_00213  DNA-binding protein  44.44 
 
 
101 aa  79  0.00000000000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011311  VSAL_p840_28  DNA-binding protein HU-alpha  43.96 
 
 
91 aa  78.6  0.00000000000003  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_002182  DNA-binding protein HU-alpha  44.44 
 
 
90 aa  78.6  0.00000000000003  Vibrio sp. Ex25  Bacteria  normal  0.131368  n/a   
 
 
-
 
NC_007644  Moth_0085  nucleoid protein Hbs  44.94 
 
 
91 aa  78.2  0.00000000000003  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0539634  normal 
 
 
-
 
NC_007963  Csal_2043  histone-like DNA-binding protein  40 
 
 
90 aa  78.6  0.00000000000003  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2873  transcriptional regulator HU subunit beta  42.22 
 
 
90 aa  78.6  0.00000000000003  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1745  histone family protein DNA-binding protein  41.11 
 
 
90 aa  78.2  0.00000000000004  Pseudomonas putida W619  Bacteria  normal  0.693876  hitchhiker  0.00044049 
 
 
-
 
NC_009783  VIBHAR_01420  nucleoid DNA-binding protein  42.22 
 
 
90 aa  77.8  0.00000000000004  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012912  Dd1591_3065  transcriptional regulator HU subunit beta  41.11 
 
 
90 aa  78.2  0.00000000000004  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1611  nucleoid protein HU beta subunit  44.44 
 
 
90 aa  78.2  0.00000000000004  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.000132089  normal 
 
 
-
 
NC_013093  Amir_0860  histone family protein DNA-binding protein  41.11 
 
 
90 aa  77.8  0.00000000000004  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0124999  n/a   
 
 
-
 
NC_011312  VSAL_I2846  DNA-binding protein HU-alpha  43.33 
 
 
90 aa  77.8  0.00000000000005  Aliivibrio salmonicida LFI1238  Bacteria  decreased coverage  0.00368421  n/a   
 
 
-
 
NC_013456  VEA_004041  DNA-binding protein HU-beta  42.22 
 
 
90 aa  77.4  0.00000000000005  Vibrio sp. Ex25  Bacteria  unclonable  0.000000015142  n/a   
 
 
-
 
NC_010465  YPK_3231  transcriptional regulator HU subunit beta  41.11 
 
 
90 aa  77.4  0.00000000000006  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3051  transcriptional regulator HU subunit beta  41.11 
 
 
90 aa  77.4  0.00000000000006  Yersinia pestis Angola  Bacteria  hitchhiker  0.00488463  normal 
 
 
-
 
NC_009708  YpsIP31758_3089  transcriptional regulator HU subunit beta  41.11 
 
 
90 aa  77.4  0.00000000000006  Yersinia pseudotuberculosis IP 31758  Bacteria  unclonable  1.42002e-19  n/a   
 
 
-
 
NC_011071  Smal_0839  histone family protein DNA-binding protein  42.22 
 
 
90 aa  77  0.00000000000007  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0237084  normal 
 
 
-
 
NC_008048  Sala_0799  histone-like DNA-binding protein  44.44 
 
 
90 aa  77  0.00000000000007  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.0173855 
 
 
-
 
NC_013385  Adeg_2069  histone family protein DNA-binding protein  42.22 
 
 
95 aa  77  0.00000000000008  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_1468  DNA-binding protein HU beta subunit  43.33 
 
 
91 aa  77  0.00000000000009  Psychromonas ingrahamii 37  Bacteria  normal  0.961834  normal  0.643607 
 
 
-
 
NC_008789  Hhal_0600  histone family protein DNA-binding protein  43.33 
 
 
90 aa  76.3  0.0000000000001  Halorhodospira halophila SL1  Bacteria  normal  0.0791658  n/a   
 
 
-
 
NC_009436  Ent638_0907  transcriptional regulator HU subunit beta  40 
 
 
90 aa  76.3  0.0000000000001  Enterobacter sp. 638  Bacteria  normal  0.0908162  normal 
 
 
-
 
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