More than 300 homologs were found in PanDaTox collection
for query gene RPC_1063 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007925  RPC_1063  biotin/lipoyl attachment  100 
 
 
69 aa  129  2.0000000000000002e-29  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3292  biotin/lipoyl attachment  94.2 
 
 
69 aa  123  7e-28  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1328  biotin/lipoyl attachment  65.22 
 
 
69 aa  83.6  8e-16  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_02060  pyruvate carboxylase subunit B  50 
 
 
599 aa  68.9  0.00000000002  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_1857  Carbamoyl-phosphate synthase L chain ATP- binding protein  50 
 
 
700 aa  64.7  0.0000000004  Haliangium ochraceum DSM 14365  Bacteria  normal  0.737896  normal 
 
 
-
 
NC_007643  Rru_A1941  3-methylcrotonoyl-CoA carboxylase, alpha subunit  44.78 
 
 
686 aa  62.4  0.000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.891813  n/a   
 
 
-
 
NC_013730  Slin_2390  biotin/lipoyl attachment domain-containing protein  51.56 
 
 
168 aa  61.6  0.000000003  Spirosoma linguale DSM 74  Bacteria  normal  0.0158727  normal 
 
 
-
 
NC_002976  SERP0704  pyruvate carboxylase  41.54 
 
 
1147 aa  60.8  0.000000006  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_2116  carbamoyl-phosphate synthase L chain ATP-binding  50.82 
 
 
692 aa  60.5  0.000000008  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.278717 
 
 
-
 
NC_009439  Pmen_4478  pyruvate carboxylase subunit B  42.65 
 
 
602 aa  60.5  0.000000008  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1916  pyruvate carboxylase subunit B  43.28 
 
 
609 aa  60.1  0.00000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.566124  n/a   
 
 
-
 
NC_013124  Afer_1032  Carbamoyl-phosphate synthase L chain ATP- binding  44.78 
 
 
646 aa  60.1  0.00000001  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.485137  n/a   
 
 
-
 
NC_008781  Pnap_0475  carbamoyl-phosphate synthase L chain, ATP-binding  45.9 
 
 
670 aa  58.9  0.00000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_3759  3-methylcrotonoyl-CoA carboxylase, alpha subunit  47.54 
 
 
672 aa  58.5  0.00000003  Acidovorax sp. JS42  Bacteria  normal  normal  0.746239 
 
 
-
 
NC_007204  Psyc_0311  3-methylcrotonoyl-CoA carboxylase, alpha subunit  46.67 
 
 
706 aa  58.5  0.00000003  Psychrobacter arcticus 273-4  Bacteria  normal  normal 
 
 
-
 
NC_009632  SaurJH1_1196  pyruvate carboxylase  38.46 
 
 
1150 aa  58.5  0.00000003  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0139  pyruvate carboxylase subunit B  51.67 
 
 
616 aa  58.2  0.00000003  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0177448  n/a   
 
 
-
 
NC_009487  SaurJH9_1174  pyruvate carboxylase  38.46 
 
 
1150 aa  58.5  0.00000003  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.810456  n/a   
 
 
-
 
NC_014230  CA2559_11353  biotin carboxyl carrier protein  44.12 
 
 
164 aa  58.5  0.00000003  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.0751825  n/a   
 
 
-
 
NC_011992  Dtpsy_3040  Carbamoyl-phosphate synthase L chain ATP-binding  47.54 
 
 
672 aa  58.5  0.00000003  Acidovorax ebreus TPSY  Bacteria  normal  0.233889  n/a   
 
 
-
 
NC_013889  TK90_1606  oxaloacetate decarboxylase alpha subunit  47.76 
 
 
608 aa  58.2  0.00000004  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0818232  normal 
 
 
-
 
NC_011071  Smal_0196  Carbamoyl-phosphate synthase L chain ATP-binding  47.76 
 
 
660 aa  57.4  0.00000006  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.469913  normal 
 
 
-
 
NC_014150  Bmur_1757  biotin/lipoyl attachment domain-containing protein  49.23 
 
 
134 aa  57.4  0.00000007  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B0963  3-methylcrotonoyl-CoA carboxylase, alpha subunit  44.78 
 
 
679 aa  57.4  0.00000007  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.5845 
 
 
-
 
NC_009511  Swit_2163  carbamoyl-phosphate synthase L chain, ATP-binding  44.78 
 
 
623 aa  57  0.00000008  Sphingomonas wittichii RW1  Bacteria  normal  0.0578924  normal  0.656979 
 
 
-
 
NC_010676  Bphyt_4689  Carbamoyl-phosphate synthase L chain ATP-binding  43.28 
 
 
692 aa  56.6  0.0000001  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_3265  Carbamoyl-phosphate synthase L chain ATP-binding protein  44.78 
 
 
702 aa  56.6  0.0000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0427977  normal 
 
 
-
 
NC_012791  Vapar_4719  Carbamoyl-phosphate synthase L chain ATP-binding  45 
 
 
667 aa  56.2  0.0000001  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1192  biotin/lipoyl attachment domain-containing protein  46.88 
 
 
634 aa  56.2  0.0000001  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.345988  n/a   
 
 
-
 
NC_010002  Daci_5970  carbamoyl-phosphate synthase L chain ATP-binding  43.28 
 
 
672 aa  55.8  0.0000002  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_16520  acetyl/propionyl-CoA carboxylase, alpha subunit  46.97 
 
 
666 aa  55.5  0.0000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3830  carbamoyl-phosphate synthase L chain, ATP-binding  45.9 
 
 
674 aa  55.8  0.0000002  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_0342  carbamoyl-phosphate synthase L chain, ATP-binding  43.33 
 
 
704 aa  56.2  0.0000002  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_3202  carbamoyl-phosphate synthase L chain, ATP-binding protein  44.78 
 
 
677 aa  55.8  0.0000002  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3264  carbamoyl-phosphate synthase L chain, ATP-binding  44.78 
 
 
677 aa  55.8  0.0000002  Mycobacterium sp. KMS  Bacteria  normal  0.079197  normal 
 
 
-
 
NC_014158  Tpau_2829  Carbamoyl-phosphate synthase L chain ATP- binding protein  44.44 
 
 
651 aa  55.5  0.0000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_1876  carbamoyl-phosphate synthase L chain ATP-binding  42.86 
 
 
621 aa  55.8  0.0000002  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3213  carbamoyl-phosphate synthase L chain, ATP-binding  44.78 
 
 
677 aa  55.8  0.0000002  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_4233  Carbamoyl-phosphate synthase L chain ATP- binding  50.77 
 
 
594 aa  55.1  0.0000003  Nakamurella multipartita DSM 44233  Bacteria  normal  0.213527  normal  0.607428 
 
 
-
 
NC_007796  Mhun_3189  pyruvate carboxylase subunit B  47.76 
 
 
577 aa  54.7  0.0000004  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_009656  PSPA7_6223  pyruvate carboxylase subunit B  47.46 
 
 
607 aa  55.1  0.0000004  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2435  biotin/lipoyl attachment domain-containing protein  41.79 
 
 
134 aa  54.7  0.0000004  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00647679  n/a   
 
 
-
 
NC_008463  PA14_71720  pyruvate carboxylase subunit B  47.46 
 
 
607 aa  54.7  0.0000004  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_2457  pyruvate carboxylase  49.12 
 
 
1127 aa  54.7  0.0000004  Conexibacter woesei DSM 14684  Bacteria  normal  decreased coverage  0.000300234 
 
 
-
 
NC_007514  Cag_0859  oxaloacetate decarboxylase, alpha subunit  48.44 
 
 
650 aa  54.3  0.0000005  Chlorobium chlorochromatii CaD3  Bacteria  hitchhiker  0.00177232  n/a   
 
 
-
 
NC_009921  Franean1_0965  biotin/lipoyl attachment domain-containing protein  44.12 
 
 
72 aa  54.7  0.0000005  Frankia sp. EAN1pec  Bacteria  normal  0.279556  normal  0.189514 
 
 
-
 
NC_012856  Rpic12D_0123  Carbamoyl-phosphate synthase L chain ATP-binding  45 
 
 
674 aa  54.3  0.0000005  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4157  3-methylcrotonoyl-CoA carboxylase, alpha subunit  45.9 
 
 
663 aa  54.7  0.0000005  Polaromonas sp. JS666  Bacteria  normal  0.825758  normal 
 
 
-
 
NC_013926  Aboo_1365  biotin/lipoyl attachment domain-containing protein  45.16 
 
 
125 aa  54.3  0.0000006  Aciduliprofundum boonei T469  Archaea  normal  0.0208474  n/a   
 
 
-
 
NC_007333  Tfu_0947  putative acetyl/propionyl CoA carboxylase alpha subunit: biotin carboxylase  42.86 
 
 
696 aa  54.3  0.0000006  Thermobifida fusca YX  Bacteria  normal  0.0775564  n/a   
 
 
-
 
NC_009524  PsycPRwf_2064  carbamoyl-phosphate synthase L chain, ATP-binding  45 
 
 
700 aa  53.9  0.0000006  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_4351  3-methylcrotonoyl-CoA carboxylase, alpha subunit  46.67 
 
 
677 aa  53.9  0.0000006  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_10991  acetyl-/propionyl-coenzyme A carboxylase subunit alpha  43.28 
 
 
667 aa  54.3  0.0000006  Mycobacterium tuberculosis F11  Bacteria  normal  0.661378  normal  0.811599 
 
 
-
 
NC_009338  Mflv_4614  carbamoyl-phosphate synthase L chain, ATP-binding  48.33 
 
 
671 aa  53.9  0.0000006  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.143808  normal 
 
 
-
 
NC_007005  Psyr_5060  pyruvate carboxylase subunit B  41.18 
 
 
602 aa  53.5  0.0000008  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_2178  biotin/lipoyl attachment domain-containing protein  46.03 
 
 
174 aa  53.9  0.0000008  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_5510  oxaloacetate decarboxylase, alpha subunit  44.44 
 
 
602 aa  53.5  0.0000009  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_1410  biotin/lipoyl attachment domain-containing protein  41.54 
 
 
71 aa  53.5  0.0000009  Nakamurella multipartita DSM 44233  Bacteria  normal  0.501962  normal 
 
 
-
 
NC_007512  Plut_1267  oxaloacetate decarboxylase, alpha subunit  43.94 
 
 
615 aa  53.5  0.0000009  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0847  carbamoyl-phosphate synthase L chain, ATP-binding  45.9 
 
 
730 aa  53.1  0.000001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_4393  pyruvate carboxylase  44.78 
 
 
645 aa  53.1  0.000001  Mycobacterium sp. KMS  Bacteria  normal  0.318019  normal 
 
 
-
 
NC_006368  lpp1792  hypothetical protein  44.12 
 
 
654 aa  52.8  0.000001  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_007492  Pfl01_5639  pyruvate carboxylase subunit B  42.86 
 
 
602 aa  52.8  0.000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.509278  normal  0.279946 
 
 
-
 
NC_013757  Gobs_1473  Carbamoyl-phosphate synthase L chain ATP- binding protein  43.75 
 
 
666 aa  52.8  0.000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_4307  pyruvate carboxylase  44.78 
 
 
645 aa  53.1  0.000001  Mycobacterium sp. MCS  Bacteria  normal  0.295929  n/a   
 
 
-
 
NC_009921  Franean1_4048  carbamoyl-phosphate synthase L chain ATP-binding  44.12 
 
 
700 aa  53.1  0.000001  Frankia sp. EAN1pec  Bacteria  normal  normal  0.197426 
 
 
-
 
NC_010682  Rpic_0116  Carbamoyl-phosphate synthase L chain ATP-binding  43.33 
 
 
674 aa  52.8  0.000001  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_4687  pyruvate carboxylase  44.78 
 
 
645 aa  53.5  0.000001  Mycobacterium sp. JLS  Bacteria  normal  normal  0.880819 
 
 
-
 
NC_013595  Sros_8317  acetyl-CoA carboxylase biotin carboxyl carrier protein subunit  36.76 
 
 
70 aa  53.1  0.000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc0265  acyl-CoA carboxylase subunit alpha  43.33 
 
 
712 aa  52  0.000002  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR0018  biotin carboxylase  44.44 
 
 
673 aa  52.4  0.000002  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_4093  biotin/lipoyl attachment domain-containing protein  38.81 
 
 
73 aa  52.8  0.000002  Salinispora arenicola CNS-205  Bacteria  normal  0.607208  normal  0.0610793 
 
 
-
 
NC_010322  PputGB1_5395  pyruvate carboxylase subunit B  44.44 
 
 
602 aa  52.4  0.000002  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0145041 
 
 
-
 
NC_006368  lpp0531  pyruvate carboxylase subunit B  39.71 
 
 
596 aa  52.8  0.000002  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl0507  pyruvate carboxylase subunit B  39.71 
 
 
596 aa  52.4  0.000002  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1793  hypothetical protein  44.12 
 
 
654 aa  52.8  0.000002  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007347  Reut_A0151  3-methylcrotonoyl-CoA carboxylase, alpha subunit  42.62 
 
 
674 aa  52.8  0.000002  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1463  3-methylcrotonoyl-CoA carboxylase, alpha subunit  38.81 
 
 
674 aa  52.4  0.000002  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011981  Avi_7691  acetyl-CoA carboxylase biotin carboxylase  44.26 
 
 
662 aa  52  0.000002  Agrobacterium vitis S4  Bacteria  normal  0.817206  n/a   
 
 
-
 
NC_013441  Gbro_3828  Carbamoyl-phosphate synthase L chain ATP- binding protein  43.94 
 
 
672 aa  52.8  0.000002  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_3765  biotin/lipoyl attachment  44.12 
 
 
76 aa  52.8  0.000002  Frankia sp. CcI3  Bacteria  normal  0.10009  normal  0.309816 
 
 
-
 
NC_009505  BOV_0015  biotin carboxylase  44.44 
 
 
673 aa  52.4  0.000002  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009714  CHAB381_1620  biotin/lipoyl attachment  44.62 
 
 
609 aa  52.8  0.000002  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0608  3-methylcrotonoyl-CoA carboxylase, subunit alpha  41.67 
 
 
679 aa  52.8  0.000002  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00695575  normal  0.371744 
 
 
-
 
NC_008048  Sala_1533  carbamoyl-phosphate synthase L chain, ATP-binding  41.27 
 
 
612 aa  52  0.000002  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.385954  normal 
 
 
-
 
NC_008346  Swol_0519  pyruvate carboxylase  38.24 
 
 
1144 aa  52.4  0.000002  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_1142  pyruvate carboxylase  41.54 
 
 
1146 aa  52.4  0.000002  Maricaulis maris MCS10  Bacteria  normal  0.0248368  normal  0.044238 
 
 
-
 
NC_008347  Mmar10_1727  carbamoyl-phosphate synthase L chain, ATP-binding  40.3 
 
 
667 aa  52.4  0.000002  Maricaulis maris MCS10  Bacteria  normal  0.807685  normal  0.290764 
 
 
-
 
NC_011666  Msil_1360  pyruvate carboxylase  44.62 
 
 
1147 aa  52  0.000003  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0615601 
 
 
-
 
NC_007348  Reut_B4460  carbamoyl-phosphate synthase subunit L  38.81 
 
 
667 aa  52  0.000003  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2800  carbamoyl-phosphate synthase L chain ATP-binding  43.28 
 
 
696 aa  52  0.000003  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2125  carbamoyl-phosphate synthase L chain, ATP-binding  37.31 
 
 
662 aa  51.6  0.000003  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7733  biotin/lipoyl attachment domain-containing protein  40.3 
 
 
71 aa  52  0.000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_5118  carbamoyl-phosphate synthase L chain ATP-binding  42.42 
 
 
666 aa  52  0.000003  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_3925  pyruvate carboxylase subunit B  44.26 
 
 
602 aa  51.6  0.000003  Marinomonas sp. MWYL1  Bacteria  normal  0.246664  normal 
 
 
-
 
NC_010803  Clim_0808  biotin/lipoyl attachment domain-containing protein  45.45 
 
 
611 aa  52  0.000003  Chlorobium limicola DSM 245  Bacteria  normal  0.443377  n/a   
 
 
-
 
NC_013530  Xcel_2101  Carbamoyl-phosphate synthase L chain ATP- binding protein  42.65 
 
 
792 aa  51.2  0.000004  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.486656  n/a   
 
 
-
 
NC_007298  Daro_0089  3-methylcrotonoyl-CoA carboxylase, alpha subunit  40.3 
 
 
666 aa  51.6  0.000004  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_0700  biotin/lipoyl attachment protein  44.44 
 
 
132 aa  51.2  0.000004  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_1642  carbamoyl-phosphate synthase L chain, ATP-binding  43.08 
 
 
623 aa  51.6  0.000004  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.473054  n/a   
 
 
-
 
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