15 homologs were found in PanDaTox collection
for query gene Pmen_4031 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009439  Pmen_4031  XRE family transcriptional regulator  100 
 
 		 88 aa  172  9.999999999999999e-43  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  0.858841 
 
 
-
 
NC_008786  Veis_3102  XRE family transcriptional regulator  79.76 
 
 		 87 aa  134  5e-31  Verminephrobacter eiseniae EF01-2  Bacteria  normal  1  normal  0.0346423 
 
 
-
 
NC_007951  Bxe_A1931  XRE family transcriptional regulator  75.9 
 
 		 88 aa  124  4.0000000000000003e-28  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010676  Bphyt_5431  transcriptional regulator, XRE family  35 
 
 		 110 aa  58.2  0.00000004  Burkholderia phytofirmans PsJN  Bacteria  normal  0.716387  normal  0.867638 
 
 
-
 
NC_008607  Ppro_3808  XRE family transcriptional regulator  34.62 
 
 		 80 aa  52.8  0.000002  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.0020912  n/a   
 
 
-
 
NC_010815  Glov_3687  transcriptional regulator, XRE family  33.33 
 
 		 79 aa  49.7  0.00001  Geobacter lovleyi SZ  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012918  GM21_0820  transcriptional regulator, XRE family  24.32 
 
 		 79 aa  43.5  0.001  Geobacter sp. M21  Bacteria  n/a    normal  0.0102782 
 
 
-
 
NC_013124  Afer_0033  transcriptional regulator, XRE family  44.07 
 
 		 169 aa  42.7  0.002  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.400371  n/a   
 
 
-
 
NC_013530  Xcel_1144  transcriptional regulator, XRE family  41.67 
 
 		 266 aa  42.4  0.002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_007514  Cag_1274  XRE family transcriptional regulator  28.92 
 
 		 86 aa  42  0.003  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.329441  n/a   
 
 
-
 
NC_007949  Bpro_5088  XRE family transcriptional regulator  38.1 
 
 		 167 aa  41.2  0.004  Polaromonas sp. JS666  Bacteria  hitchhiker  0.0000165067  normal  1 
 
 
-
 
NC_007492  Pfl01_0204  XRE family transcriptional regulator  31.51 
 
 		 82 aa  40.8  0.006  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007963  Csal_0197  XRE family transcriptional regulator  47.46 
 
 		 190 aa  40.8  0.007  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0555347  n/a   
 
 
-
 
NC_009486  Tpet_0275  cupin 2 domain-containing protein  39.66 
 
 		 188 aa  40  0.01  Thermotoga petrophila RKU-1  Bacteria  decreased coverage  0.00000000353927  n/a   
 
 
-
 
NC_010483  TRQ2_0273  XRE family transcriptional regulator  39.66 
 
 		 176 aa  40  0.01  Thermotoga sp. RQ2  Bacteria  decreased coverage  0.0000144131  n/a   
 
 
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