More than 300 homologs were found in PanDaTox collection
for query gene PC1_0628 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012917  PC1_0628  binding-protein-dependent transport systems inner membrane component  100 
 
 
299 aa  609  1e-173  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0842  binding-protein-dependent transport systems inner membrane component  94.65 
 
 
299 aa  545  1e-154  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3267  binding-protein-dependent transport systems inner membrane component  81.32 
 
 
295 aa  459  9.999999999999999e-129  Dickeya dadantii Ech703  Bacteria  normal  0.901661  n/a   
 
 
-
 
NC_012912  Dd1591_3383  binding-protein-dependent transport systems inner membrane component  80.88 
 
 
295 aa  446  1.0000000000000001e-124  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6752  binding-protein-dependent transport systems inner membrane component  49.42 
 
 
275 aa  254  2.0000000000000002e-66  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6663  binding-protein-dependent transport systems inner membrane component  46.52 
 
 
274 aa  247  2e-64  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0563961 
 
 
-
 
NC_010002  Daci_5304  binding-protein-dependent transport systems inner membrane component  48 
 
 
282 aa  215  8e-55  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.817477 
 
 
-
 
NC_008751  Dvul_0222  binding-protein-dependent transport systems inner membrane component  39.73 
 
 
277 aa  213  3.9999999999999995e-54  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_0658  binding-protein-dependent transport systems inner membrane component  42.53 
 
 
277 aa  211  9e-54  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.390959 
 
 
-
 
NC_008782  Ajs_3304  binding-protein-dependent transport systems inner membrane component  44 
 
 
273 aa  209  3e-53  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2657  binding-protein-dependent transport systems inner membrane component  44 
 
 
273 aa  209  3e-53  Acidovorax ebreus TPSY  Bacteria  normal  0.0449998  n/a   
 
 
-
 
NC_008043  TM1040_3214  binding-protein-dependent transport systems inner membrane component  37.16 
 
 
268 aa  193  3e-48  Ruegeria sp. TM1040  Bacteria  normal  0.620459  normal 
 
 
-
 
NC_012669  Bcav_2848  binding-protein-dependent transport systems inner membrane component  42.67 
 
 
273 aa  193  3e-48  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.441003 
 
 
-
 
NC_014213  Mesil_3420  proteophosphoglycan ppg4  34.98 
 
 
272 aa  165  6.9999999999999995e-40  Meiothermus silvanus DSM 9946  Bacteria  normal  0.257772  normal 
 
 
-
 
NC_014213  Mesil_3228  binding-protein-dependent transport systems inner membrane component  34.98 
 
 
272 aa  165  6.9999999999999995e-40  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00685083  normal 
 
 
-
 
NC_007958  RPD_3150  binding-protein-dependent transport systems inner membrane component  34.72 
 
 
278 aa  165  9e-40  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.198934  normal  0.328694 
 
 
-
 
NC_007778  RPB_0175  binding-protein dependent transport system inner membrane protein  32.95 
 
 
278 aa  165  1.0000000000000001e-39  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.419307  normal 
 
 
-
 
NC_006274  BCZK1636  sugar ABC transporter, permease  32.82 
 
 
277 aa  162  8.000000000000001e-39  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1901  sugar ABC transporter, permease protein  32.82 
 
 
277 aa  160  2e-38  Bacillus cereus ATCC 10987  Bacteria  normal  0.682079  n/a   
 
 
-
 
NC_009832  Spro_2573  binding-protein-dependent transport systems inner membrane component  31.39 
 
 
272 aa  159  5e-38  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2616  binding-protein-dependent transport systems inner membrane component  36.11 
 
 
294 aa  159  5e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000583333  n/a   
 
 
-
 
NC_007604  Synpcc7942_0471  ABC-type sugar transport system permease component-like  35.43 
 
 
276 aa  158  8e-38  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_2601  binding-protein-dependent transport systems inner membrane component  32.18 
 
 
275 aa  158  9e-38  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.260696  normal 
 
 
-
 
NC_011004  Rpal_0130  binding-protein-dependent transport systems inner membrane component  31.79 
 
 
278 aa  157  2e-37  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.519096  n/a   
 
 
-
 
NC_011899  Hore_20610  binding-protein-dependent transport systems inner membrane component  34.52 
 
 
273 aa  155  1e-36  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2293  binding-protein-dependent transport systems inner membrane component  32.2 
 
 
297 aa  154  2e-36  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1507  binding-protein-dependent transport systems inner membrane component  32.58 
 
 
303 aa  152  4e-36  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.659062  normal 
 
 
-
 
NC_011661  Dtur_0383  binding-protein-dependent transport systems inner membrane component  32.58 
 
 
268 aa  152  5e-36  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0478  ABC transporter, permease protein  31.68 
 
 
275 aa  152  8e-36  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009939  Dgeo_2917  ABC-type sugar transport system, permease component  32.82 
 
 
273 aa  152  8.999999999999999e-36  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_1524  binding-protein-dependent transport systems inner membrane component  33.47 
 
 
298 aa  151  1e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_1751  binding-protein-dependent transport systems inner membrane component  32.38 
 
 
313 aa  150  2e-35  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000000624363 
 
 
-
 
NC_011661  Dtur_1730  binding-protein-dependent transport systems inner membrane component  32.47 
 
 
285 aa  149  4e-35  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.0000816013  n/a   
 
 
-
 
NC_013739  Cwoe_3981  binding-protein-dependent transport systems inner membrane component  32.94 
 
 
274 aa  148  1.0000000000000001e-34  Conexibacter woesei DSM 14684  Bacteria  normal  0.270796  normal 
 
 
-
 
NC_012669  Bcav_2818  binding-protein-dependent transport systems inner membrane component  34.2 
 
 
311 aa  147  1.0000000000000001e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.316897  normal 
 
 
-
 
NC_013131  Caci_7904  binding-protein-dependent transport systems inner membrane component  30.94 
 
 
271 aa  148  1.0000000000000001e-34  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2313  binding-protein-dependent transport systems inner membrane component  33.07 
 
 
280 aa  148  1.0000000000000001e-34  Sinorhizobium medicae WSM419  Bacteria  normal  0.0326071  normal  0.242877 
 
 
-
 
NC_013174  Jden_2243  binding-protein-dependent transport systems inner membrane component  31.8 
 
 
307 aa  147  2.0000000000000003e-34  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.556058 
 
 
-
 
NC_012669  Bcav_1657  binding-protein-dependent transport systems inner membrane component  31.23 
 
 
284 aa  147  2.0000000000000003e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.354053  normal  0.174244 
 
 
-
 
NC_013172  Bfae_29880  carbohydrate ABC transporter membrane protein  32.57 
 
 
304 aa  147  2.0000000000000003e-34  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_1314  ABC transporter, permease protein  31.6 
 
 
273 aa  147  2.0000000000000003e-34  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_011886  Achl_2662  binding-protein-dependent transport systems inner membrane component  33.59 
 
 
304 aa  146  4.0000000000000006e-34  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009486  Tpet_0320  monosaccharide-transporting ATPase  32.73 
 
 
701 aa  146  5e-34  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_1152  binding-protein-dependent transport systems inner membrane component  32.5 
 
 
296 aa  145  6e-34  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.500307  n/a   
 
 
-
 
NC_013172  Bfae_07460  carbohydrate ABC transporter membrane protein  35.16 
 
 
312 aa  144  1e-33  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3386  binding-protein-dependent transport systems inner membrane component  33.82 
 
 
308 aa  144  1e-33  Arthrobacter sp. FB24  Bacteria  normal  0.972621  n/a   
 
 
-
 
NC_009667  Oant_0638  binding-protein-dependent transport systems inner membrane component  31.29 
 
 
295 aa  144  1e-33  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0719  binding-protein-dependent transport systems inner membrane component  33.69 
 
 
279 aa  144  2e-33  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0114  binding-protein-dependent transport systems inner membrane component  31.14 
 
 
299 aa  143  3e-33  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0163331  normal 
 
 
-
 
NC_011981  Avi_7591  ABC transporter membrane spanning protein  33.33 
 
 
275 aa  144  3e-33  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_1289  ABC transporter, permease protein  29.6 
 
 
303 aa  143  4e-33  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013517  Sterm_4035  binding-protein-dependent transport systems inner membrane component  29.92 
 
 
275 aa  142  5e-33  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0482  binding-protein-dependent transport systems inner membrane component  31.72 
 
 
273 aa  142  5e-33  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2094  binding-protein dependent transport system inner membrane protein  33.21 
 
 
279 aa  142  6e-33  Anabaena variabilis ATCC 29413  Bacteria  normal  0.179988  hitchhiker  0.00000184258 
 
 
-
 
NC_008786  Veis_3455  binding-protein-dependent transport systems inner membrane component  30.65 
 
 
277 aa  142  6e-33  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.603353  normal 
 
 
-
 
NC_013739  Cwoe_4881  binding-protein-dependent transport systems inner membrane component  29.55 
 
 
295 aa  142  8e-33  Conexibacter woesei DSM 14684  Bacteria  normal  0.48115  normal 
 
 
-
 
NC_011772  BCG9842_B4734  putative glycerol-3-phosphate ABC transporter, permease protein  31.34 
 
 
273 aa  142  9e-33  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_0631  glycerol-3-phosphate ABC transporter, permease protein, putative  30.97 
 
 
273 aa  141  9.999999999999999e-33  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0956  binding-protein-dependent transport systems inner membrane component  34.78 
 
 
286 aa  141  9.999999999999999e-33  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.143013 
 
 
-
 
NC_011726  PCC8801_2231  Monosaccharide-transporting ATPase  32.81 
 
 
271 aa  141  9.999999999999999e-33  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_2285  binding-protein-dependent transport systems inner membrane component  32.81 
 
 
271 aa  141  9.999999999999999e-33  Cyanothece sp. PCC 8802  Bacteria  normal  hitchhiker  0.00314445 
 
 
-
 
NC_013411  GYMC61_1729  binding-protein-dependent transport systems inner membrane component  32.6 
 
 
275 aa  141  9.999999999999999e-33  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009565  TBFG_12849  sn-glycerol-3-phosphate transport integral membrane protein ABC transporter ugpE  33.03 
 
 
275 aa  141  9.999999999999999e-33  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00000000000144305  normal 
 
 
-
 
NC_011725  BCB4264_A0605  putative glycerol-3-phosphate ABC transporter, permease protein  31.34 
 
 
273 aa  142  9.999999999999999e-33  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_4398  Monosaccharide-transporting ATPase  32.16 
 
 
281 aa  141  9.999999999999999e-33  Cyanothece sp. PCC 7425  Bacteria  hitchhiker  0.000709548  normal  0.804646 
 
 
-
 
NC_012669  Bcav_2832  binding-protein-dependent transport systems inner membrane component  30.16 
 
 
324 aa  140  1.9999999999999998e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.051903  normal 
 
 
-
 
NC_010320  Teth514_2199  monosaccharide-transporting ATPase  31.25 
 
 
269 aa  140  1.9999999999999998e-32  Thermoanaerobacter sp. X514  Bacteria  normal  0.139368  n/a   
 
 
-
 
NC_011831  Cagg_2194  binding-protein-dependent transport systems inner membrane component  34.98 
 
 
296 aa  141  1.9999999999999998e-32  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.982521  normal 
 
 
-
 
NC_012669  Bcav_1528  binding-protein-dependent transport systems inner membrane component  32.86 
 
 
307 aa  141  1.9999999999999998e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.607833  normal  0.154885 
 
 
-
 
NC_011658  BCAH187_A0699  putative glycerol-3-phosphate ABC transporter, permease protein  30.6 
 
 
273 aa  140  1.9999999999999998e-32  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0479  glycerol-3-phosphate ABC transporter, permease  30.6 
 
 
273 aa  140  3e-32  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0481  glycerol-3-phosphate ABC transporter, permease  30.6 
 
 
273 aa  140  3e-32  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_2838  binding-protein-dependent transport systems inner membrane component  34.47 
 
 
276 aa  140  3e-32  Frankia sp. CcI3  Bacteria  normal  normal  0.314351 
 
 
-
 
NC_011773  BCAH820_0624  putative glycerol-3-phosphate ABC transporter, permease protein  30.6 
 
 
273 aa  140  3e-32  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_010003  Pmob_0287  binding-protein-dependent transport systems inner membrane component  33.69 
 
 
279 aa  140  3e-32  Petrotoga mobilis SJ95  Bacteria  normal  0.0553602  n/a   
 
 
-
 
NC_005945  BAS0537  glycerol-3-phosphate ABC transporter permease  30.6 
 
 
273 aa  140  3.9999999999999997e-32  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0568  glycerol-3-phosphate ABC transporter permease protein  30.6 
 
 
273 aa  140  3.9999999999999997e-32  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_1638  binding-protein-dependent transport systems inner membrane component  31.09 
 
 
311 aa  140  3.9999999999999997e-32  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.155632  n/a   
 
 
-
 
NC_013131  Caci_4695  binding-protein-dependent transport systems inner membrane component  34.25 
 
 
271 aa  139  3.9999999999999997e-32  Catenulispora acidiphila DSM 44928  Bacteria  hitchhiker  0.00258755  normal  0.655339 
 
 
-
 
NC_009718  Fnod_0396  binding-protein-dependent transport systems inner membrane component  31.36 
 
 
722 aa  139  3.9999999999999997e-32  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.0626826  n/a   
 
 
-
 
NC_013172  Bfae_05110  carbohydrate ABC transporter membrane protein  30.83 
 
 
295 aa  139  4.999999999999999e-32  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_6154  binding-protein-dependent transport systems inner membrane component  29.66 
 
 
307 aa  139  4.999999999999999e-32  Frankia sp. EAN1pec  Bacteria  normal  normal  0.861609 
 
 
-
 
NC_010483  TRQ2_0114  binding-protein-dependent transport systems inner membrane component  32.46 
 
 
271 aa  139  6e-32  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3955  binding-protein-dependent transport systems inner membrane component  32.91 
 
 
274 aa  139  6e-32  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0525  binding-protein-dependent transport systems inner membrane component  31.06 
 
 
282 aa  139  6e-32  Petrotoga mobilis SJ95  Bacteria  normal  0.641488  n/a   
 
 
-
 
NC_013526  Tter_2301  binding-protein-dependent transport systems inner membrane component  31.52 
 
 
285 aa  139  7e-32  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.866945  n/a   
 
 
-
 
NC_011831  Cagg_0727  binding-protein-dependent transport systems inner membrane component  32.94 
 
 
279 aa  139  7.999999999999999e-32  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000188602  normal 
 
 
-
 
NC_013172  Bfae_06290  carbohydrate ABC transporter membrane protein  32.94 
 
 
291 aa  138  8.999999999999999e-32  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3536  putative sugar transporter, permease protein  31.64 
 
 
282 aa  138  1e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_4196  binding-protein-dependent transport systems inner membrane component  30.65 
 
 
292 aa  138  1e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010483  TRQ2_0338  monosaccharide-transporting ATPase  32.73 
 
 
701 aa  137  2e-31  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_14810  carbohydrate ABC transporter membrane protein  32.2 
 
 
305 aa  137  2e-31  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.0148237 
 
 
-
 
NC_008048  Sala_0749  binding-protein-dependent transport systems inner membrane component  31.56 
 
 
278 aa  137  2e-31  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0512  binding-protein-dependent transport systems inner membrane component  34.85 
 
 
298 aa  137  2e-31  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_12076  sugar ABC transporter membrane protein  29.96 
 
 
280 aa  137  2e-31  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_2464  binding-protein-dependent transport systems inner membrane component  33.84 
 
 
270 aa  137  2e-31  Meiothermus silvanus DSM 9946  Bacteria  normal  0.668515  normal  0.267306 
 
 
-
 
NC_013205  Aaci_0915  binding-protein-dependent transport systems inner membrane component  33.07 
 
 
280 aa  137  2e-31  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_008010  Dgeo_2664  binding-protein-dependent transport systems inner membrane component  32.18 
 
 
291 aa  137  3.0000000000000003e-31  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0439942  n/a   
 
 
-
 
NC_009486  Tpet_0634  binding-protein-dependent transport systems inner membrane component  30.86 
 
 
284 aa  137  3.0000000000000003e-31  Thermotoga petrophila RKU-1  Bacteria  normal  0.146391  n/a   
 
 
-
 
NC_010524  Lcho_3241  binding-protein-dependent transport systems inner membrane component  35.21 
 
 
308 aa  137  3.0000000000000003e-31  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
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