Gene Daci_5304 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_5304 
Symbol 
ID5750916 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp5874851 
End bp5875699 
Gene Length849 bp 
Protein Length282 aa 
Translation table11 
GC content67% 
IMG OID641300429 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001566318 
Protein GI160900736 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0395] ABC-type sugar transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value0.817477 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGCTG CACCCATCGC CCCGCGCCAT GCGCCCCCCG CGCTGTACGG CGCCACCTGG 
CTGGACACGC TGGCCGCCTG GCTGCTGGCC CTGCTGTGGA TACTGCCGCT GGCCTATGCG
TTCTGGACGG CCTTCCATCC GCCCGAATAC TCGGCACGCT TCGACCTGGC AGCGCCCTGG
ACGCTGGAGA ACTTCCGCCG TGCCTGGCAG GCCGCGCCCT TTGCGCGCTA TTTCCTGAAC
ACGGCCGTGC TGGTGGTCAT GATTTTGGCG GCCCAGCTGG TGCTGGGCAC GCTGGCCGCC
TATGCCTTTG CGCGCTACCG CTTTCGCGGC CAGGGCCTGG CCTTTGCCCT GGTGCTGGTG
CAGCTGATGA TCATGCCGGA CATCCTGCTG GTGGCGAACT ACCAGACCCT GTCGCGCCTG
GGCGCCGTCG ATACGCTGCT GGGCATCGGC CTGCCGTACT TCGCATCGGC CTTTGCCATC
TTTTTGCTGC GCCAGACCTT CCTGGGCATT CCCCGGGAAC TAGACGAGGC CGCGCGGGTG
GAGGGTGCCA GCACCCTGCA GATCCTGTGG CGCGTCTACG TGCCGCTGGC GCGGCCCGTG
TACCTGGCGT TCGCGCTGGT GTCGGTGAGC TTTCACTGGA ACAACTTCCT GTGGCCGCTG
ATCATCACCA ACAGCGTGCA GGCGCGCCCG CTCACGGTGG GGCTGCAGGT GTTCTCCAGC
GTGGAGTCGG GCGTGGAATG GGCCACCATC ACGGCCGCCA CGCTGATGAG CTCGGGCCCG
CTGCTGGTGG CCTTCGTGCT GTTCCAGCGC CAGTTCGTGC AGAGCTTCAT GCGTGCGGGG
ATCAAGTGA
 
Protein sequence
MSAAPIAPRH APPALYGATW LDTLAAWLLA LLWILPLAYA FWTAFHPPEY SARFDLAAPW 
TLENFRRAWQ AAPFARYFLN TAVLVVMILA AQLVLGTLAA YAFARYRFRG QGLAFALVLV
QLMIMPDILL VANYQTLSRL GAVDTLLGIG LPYFASAFAI FLLRQTFLGI PRELDEAARV
EGASTLQILW RVYVPLARPV YLAFALVSVS FHWNNFLWPL IITNSVQARP LTVGLQVFSS
VESGVEWATI TAATLMSSGP LLVAFVLFQR QFVQSFMRAG IK