28 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
BamMC406_0099  CDS  NC_010551  112020  112547  +  528  F0F1-type ATP synthase subunit I-like protein  YP_001806817  decreased coverage  0.00813238  normal  1  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_0278  CDS  NC_010551  329224  329538  +  315  50S ribosomal protein L23  YP_001806995  decreased coverage  0.0000000000301066  normal  0.113282  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_0279  CDS  NC_010551  329541  330368  +  828  50S ribosomal protein L2  YP_001806996  decreased coverage  0.000000000585498  normal  0.0839884  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_0280  CDS  NC_010551  330379  330654  +  276  30S ribosomal protein S19  YP_001806997  decreased coverage  0.0000000000442981  normal  0.0699946  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_0401  CDS  NC_010551  449769  450407  +  639  TPR repeat-containing protein  YP_001807114  decreased coverage  0.00000198754  normal  1  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_0402  CDS  NC_010551  450452  450967  +  516  type VI secretion protein  YP_001807115  decreased coverage  0.0000194603  normal  1  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_0403  CDS  NC_010551  450983  452473  +  1491  EvpB family type VI secretion protein  YP_001807116  decreased coverage  0.00000570497  normal  1  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_0493  CDS  NC_010551  560003  561199  +  1197  cell division protein FtsZ  YP_001807206  decreased coverage  0.00000000272239  normal  1  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_0549  CDS  NC_010551  619435  620247  +  813  short-chain dehydrogenase/reductase SDR  YP_001807262  decreased coverage  0.00753595  normal  0.67708  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_0692  CDS  NC_010551  779613  780362  -  750  tol-pal system protein YbgF  YP_001807404  decreased coverage  0.000467208  normal  1  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_0742  CDS  NC_010551  830602  831846  +  1245  FAD dependent oxidoreductase  YP_001807454  normal  1  decreased coverage  0.0018802  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_0907  CDS  NC_010551  997647  1000598  -  2952  formate dehydrogenase, alpha subunit  YP_001807614  normal  0.979482  decreased coverage  0.00925571  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_1398  CDS  NC_010551  1549786  1552005  +  2220  (p)ppGpp synthetase I, SpoT/RelA  YP_001808102  decreased coverage  0.0000892312  normal  1  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_1399  CDS  NC_010551  1552447  1554354  +  1908  threonyl-tRNA synthetase  YP_001808103  decreased coverage  0.00532167  normal  1  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_1434  CDS  NC_010551  1596407  1596817  +  411  hypothetical protein  YP_001808138  decreased coverage  0.00387753  normal  0.0246951  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_1536  CDS  NC_010551  1704719  1707733  +  3015  filamentous haemagglutinin outer membrane protein  YP_001808239  decreased coverage  0.00333772  normal  0.683009  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_1562  CDS  NC_010551  1752278  1754539  +  2262  TonB-dependent siderophore receptor  YP_001808265  decreased coverage  0.0000416689  normal  0.182143  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_1855  CDS  NC_010551  2068673  2069221  +  549  alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen  YP_001808553  decreased coverage  0.000000143568  decreased coverage  0.00000054807  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_1856  CDS  NC_010551  2069298  2069825  +  528  carboxymuconolactone decarboxylase  YP_001808554  hitchhiker  0.000315441  decreased coverage  0.000000495243  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_2004  CDS  NC_010551  2234884  2236026  -  1143  NlpB/DapX family lipoprotein  YP_001808701  normal  0.547215  decreased coverage  0.00000000202263  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_2166  CDS  NC_010551  2416635  2416994  -  360  NADH dehydrogenase subunit A  YP_001808861  decreased coverage  0.000804572  normal  1  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_2510  CDS  NC_010551  2787914  2788861  -  948  binding-protein-dependent transport systems inner membrane component  YP_001809204  decreased coverage  0.00397469  normal  0.324335  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_2719  CDS  NC_010551  3017579  3018460  +  882  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase  YP_001809412  decreased coverage  0.0000847528  normal  0.467386  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_3090  CDS  NC_010551  3433481  3433894  +  414  glyoxalase/bleomycin resistance protein/dioxygenase  YP_001809781  decreased coverage  0.000000000152154  decreased coverage  0.00078643  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_R0022  tRNA  NC_010551  576217  576293  -  77  tRNA-Pro    decreased coverage  0.00000000810765  normal  0.522992  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_R0024  tRNA  NC_010551  779427  779503  -  77  tRNA-Lys    decreased coverage  0.000863518  normal  1  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_R0041  tRNA  NC_010551  1552100  1552176  +  77  tRNA-Val    decreased coverage  0.0000251829  normal  1  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_R0068  tRNA  NC_010551  2417149  2417233  -  85  tRNA-Leu    decreased coverage  0.000344448  normal  1  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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