Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_0401 |
Symbol | |
ID | 6177609 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 449769 |
End bp | 450407 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641680143 |
Product | TPR repeat-containing protein |
Protein accession | YP_001807114 |
Protein GI | 172059462 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00000198754 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGACC GTCTCTTCGC AAAACTTTCT GGGGTAGTGC TGGCTTGCGG CGTGATCGCC GGTTGCGCGA GCCAGCCGCC GGCGCCGACT GCCGAGGTGT TCAACAAGTC GCTGGCCGAT GCGGACGCCG TTGCGAAGTC GGGTGACCAG GACAAGGCGC TCGGCCTGTA CCAGCAGCTC GCGAAGGCGG ATCCGACGCG CGAGGAGCCG TGGTCGCGCA TCGCGCAGAT CCAGTTTGCC CAGAACCACT ATGGCCAGGC GATCGTCGCC GCGCAGGAAG CGCTGCAGCG TGACGCGACC GATCGCCAGG CGAAGAGCGT GCTGGCCGTC GCGGGCCTGC GGATCGCGAC GCAGTCGCTC GGCGAGTTGC GCCAGGACGC GTCGCTCGCG GGCGACGCGA AGTCGGACGC GCAGGCGCTC GCGAAGCAGC TGCGCGACAC GCTCGGCGAA TCGGCGCTGT TCCCGCCGGA GCAACGCGTC ACGAAGGCAC GTACGCCGCG CCGTATCGTT CATCGTCCGA AGGCCGGTGC GGCACCGGCC GCTGAAGCGG CAACGACCGC GCCGACGCCG CCTGCCGCAC CGCAGGCCGC CGCGGGGCAG AAGGGCGGGG CCGATCCATT CAGCGCGCTG CGCAACTGA
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Protein sequence | MKDRLFAKLS GVVLACGVIA GCASQPPAPT AEVFNKSLAD ADAVAKSGDQ DKALGLYQQL AKADPTREEP WSRIAQIQFA QNHYGQAIVA AQEALQRDAT DRQAKSVLAV AGLRIATQSL GELRQDASLA GDAKSDAQAL AKQLRDTLGE SALFPPEQRV TKARTPRRIV HRPKAGAAPA AEAATTAPTP PAAPQAAAGQ KGGADPFSAL RN
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