Gene BamMC406_0401 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_0401 
Symbol 
ID6177609 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp449769 
End bp450407 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content70% 
IMG OID641680143 
ProductTPR repeat-containing protein 
Protein accessionYP_001807114 
Protein GI172059462 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000198754 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGACC GTCTCTTCGC AAAACTTTCT GGGGTAGTGC TGGCTTGCGG CGTGATCGCC 
GGTTGCGCGA GCCAGCCGCC GGCGCCGACT GCCGAGGTGT TCAACAAGTC GCTGGCCGAT
GCGGACGCCG TTGCGAAGTC GGGTGACCAG GACAAGGCGC TCGGCCTGTA CCAGCAGCTC
GCGAAGGCGG ATCCGACGCG CGAGGAGCCG TGGTCGCGCA TCGCGCAGAT CCAGTTTGCC
CAGAACCACT ATGGCCAGGC GATCGTCGCC GCGCAGGAAG CGCTGCAGCG TGACGCGACC
GATCGCCAGG CGAAGAGCGT GCTGGCCGTC GCGGGCCTGC GGATCGCGAC GCAGTCGCTC
GGCGAGTTGC GCCAGGACGC GTCGCTCGCG GGCGACGCGA AGTCGGACGC GCAGGCGCTC
GCGAAGCAGC TGCGCGACAC GCTCGGCGAA TCGGCGCTGT TCCCGCCGGA GCAACGCGTC
ACGAAGGCAC GTACGCCGCG CCGTATCGTT CATCGTCCGA AGGCCGGTGC GGCACCGGCC
GCTGAAGCGG CAACGACCGC GCCGACGCCG CCTGCCGCAC CGCAGGCCGC CGCGGGGCAG
AAGGGCGGGG CCGATCCATT CAGCGCGCTG CGCAACTGA
 
Protein sequence
MKDRLFAKLS GVVLACGVIA GCASQPPAPT AEVFNKSLAD ADAVAKSGDQ DKALGLYQQL 
AKADPTREEP WSRIAQIQFA QNHYGQAIVA AQEALQRDAT DRQAKSVLAV AGLRIATQSL
GELRQDASLA GDAKSDAQAL AKQLRDTLGE SALFPPEQRV TKARTPRRIV HRPKAGAAPA
AEAATTAPTP PAAPQAAAGQ KGGADPFSAL RN