Gene BamMC406_1536 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_1536 
Symbol 
ID6177548 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp1704719 
End bp1707733 
Gene Length3015 bp 
Protein Length1004 aa 
Translation table11 
GC content67% 
IMG OID641681297 
Productfilamentous haemagglutinin outer membrane protein 
Protein accessionYP_001808239 
Protein GI172060587 
COG category 
COG ID 
TIGRFAM ID[TIGR01901] filamentous haemagglutinin family N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00333772 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.683009 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACAAGA CCTATTCTTT GATATGGAAC GACGCGCAAG GCGCCTGGCA GGTCGCCTGC 
GAACGAGTAC GCAGGCGAGG CAAGTCCTCG ACGCGCGCAC GTGTCGTCGC GATGGTGGCA
CTGCTCGCCG GCGGCGCGGC GACGTCTGCG AATGCGCTGC CGACAGGCGA GAAGATCATC
TCGGGGAAAG GCGACATTCA CCGTTACGAC AACGGGCAGC AGATGTCGGT CAACCAGCAT
AGCGACAAGC TGGTGACGGA CTGGCAAACG TTCAACATCG ACAAGGGGGA GCGTGTCACG
TTCAACCAGC CGTCCGCGGC GTCGATCGCG CTGAACCGGG TCGTCGGCCA GGACGGCAGC
GCAATCTACG GCAATCTCGA TGCGAACGGC CGCGTGTTCC TCGTCAACCC GAACGGCATC
CTGTTCGGCA AGAACGCGCA GATCAATGTC GGCGGGCTGG TGGCGACGAC CCTGGATATC
AGGAACGAAG ACTTCGACGC GGGCCGCTAC CGGTTTTCCG GCCAGTCGCC GAGCGAAGTG
CAGAACTTCG GCAATCTCGT GGCGGCCGAA GGCGGCGCGA TCGCGCTGCT TGGCGCGAAA
GTCGTCAACA AGGGGATCGT CCAGGCCCAG ATGGGCACCG TCGCGCTGGG TGCGGGCAGT
GACGCCACGC TGAACTTCGA CGGCAGCAAG CTGCTCAGCG TCCAGATCGA CCAGGGGATC
GTCAACGCGC TGGTCAGCAA CGAGCAGTTG CTGAGGGCCG ACGGCGGGCA GGTGCTGATG
AGCGCGAAGA CCGCCGATAC GCTGCTGCGC ACGGTCGTCA ACAACCAGGG CGTCATCGAG
GCGCGCACGC TCAGGAATGC AGCGGGCCGG ATCTCGCTGG ACGGTCACGA TGCCGGCACC
GTCAACGTCG CGGGCGTGCT CAACGCGAGC GCGACGACGC CGGGCAACGG CGGCATGGTC
GAAACCCGCG GCGCCGACGT GAAGGTGGCA CTCGGCGCGA TGGTCGACAC GCGCGCGACC
AACGGGCGTG TCGGCACCTG GCGCATCGCG TCGTCCGACG TGTCGGTCAA AGCGGGCGCG
AACCAGCCTG GCACGATCGT CGCCGACACG CTGTCGCGCA ATCTCGCGAC CACCGATGTC
GAACTGGTCG CCGAGCGCGG ACAACTTTCG GTCGACGGGC CGGTGACGTG GGCCAGCGGC
AACCGATTGA CGCTGGCCAG CCGGCAGGGC GACGTGTCGG TCAACGGCGC GCTGCGCGCG
ACGGGCGCGA ATGCGCGGTT GGCCATCGAC GCGAAGCAGA ACGTGCGGAT CGCGGCCCCG
ATCGCGCTGA CCGGCGCGAA CGCGCTGCTG ACACTCGACT ACGGTGTCGC GCACTCGCTC
TCCGGCGGCG CGGCCGTGAC GCTGTCGGGG GCCGGCGCCG GTTTCGAATC GAACGGCTAT
CGCTATACCG TGGTCCAGAA TCTGCAGCAG TTGCAGGCTG TCGATGCGAA TCTCGACGGG
CTGTACGTGC TTGGCAACGA CATCGCCGGT TCCTATTACT ACGGCACCGC GTTCAAGACG
ATCGGTTCGG GCGCGTCGTT CGCTGGCGTG TTCGACGGGC TCGGCAACAC GATCAGCAAC
CTCACCATCG CGAGCAGCAA TGCGTATGCC GGGCTGTTCG GCCGCAACAC CGGCACGCTC
GCCAACCTCA ACCTGAAGTC GTTGCGTGTC AGCGCTGCGT CGGGCGTCGG TCCGGTGGCC
ATCGGCGGGC TGGTAGGCGA AAACGCCGGC AAGATCTCGA ACGTGACCGC GACGGGTATG
CAGGTGAGTG CCGGCGCCAG CCGCAACAAT GCGCTGGGCG GTATGGTCGG CATCAATAGC
GGCGAGATTT CCCGGACGTC GTATTCGGGA TCGGTAACGG GCAACAGCAT GTCGGACGCC
GTCGGCGGCC TGGTCGGCGA GAACCGCCTG GATCAGCTTG CCGGCATCGT GTCCGACAGC
GAGTCCAACG CGACCGTATC CGGCGGCGCA TCGAACCGCG CGTCGATCGG CGGTCTCGTC
GGCGTGAACC GGGGCGGTGA AATTCTGCGC TCGACGAGTC GCGGCACCAC ATCCGGCACC
ACATCCGGCT ACAACCTCGC CGGCGTGAAC GTCGGCGGGC TCGTGGGTGC GAACCTGCTC
GGCAAGATCG TCGACGGATC GGCGCTGGGG CGCGTGACGG GCGGCTCGAG CGGCACGGCA
GGCGGGTTCG TCGGAAACAA TACCGGCACG ATCACCGGTT CGAGTGCGAG CGGTGTCGTG
GATGGCCGAT ACGCGCAGGC AATCGGCGGC TTCGTCGGGC TGAACCAGGG CAACGTGGCC
GACAGCAAGG CGCTGGGCAC CGTCTCGAGC TCATCGACAG GTTCGACGGG CGGTTTCGTC
GGCATCAATC TCGGCGACAA CGCGTTCATC GACATGGCGG AAGCGCATGG TGCGGTAACG
GGTGGTCAGG GCGCCAATGG CGGTTTCGTC GGCAGTCATC TCGGCGGCCG GATTGCTCAC
GCGGTCGCAC GCGGCAAGAC GACGGGCGGC AGTTACAGCA AGACGGGCGG CTTCGTCGGC
AGCAACGAGG CGGAATTGGC CAACGTCGAC GCGAGCGGCG ACGTGTCGGC CGGTGCCGGC
GCGTCGGTGG GCGCGTTCGC CGGCGCGAAC ACGCGGTTCG GCAAGATCGA GGCCGCGTCG
GCAACCGGCA ACGTGACGGG CGGCTCGTCG AGCACGGTGG GCGGGTTCGC AGGCGAAAAC
CTCGGCACGA TGCGCGACGT ATCGGCGTCG GGGACGGTCG GCGCGGGCTA CTACGGTGCG
ACGCTCGGCG GCCTGGTCGG TGTGAACGCG GGGCTCGTCG AGCGCGCTGC CGCAAGCGGG
CGGGTCAACG GCTCGTCGAG CCAGACCTTC GGCGGCCTCG TTGGCATCAA CCGGGGCATC
TTCCGCAACA GCGTCACGTC CGGCGAGGCT GCGCTGCAGA AGATTGCCGG TCTCAATCTC
GGTGTGATCG AGTAA
 
Protein sequence
MNKTYSLIWN DAQGAWQVAC ERVRRRGKSS TRARVVAMVA LLAGGAATSA NALPTGEKII 
SGKGDIHRYD NGQQMSVNQH SDKLVTDWQT FNIDKGERVT FNQPSAASIA LNRVVGQDGS
AIYGNLDANG RVFLVNPNGI LFGKNAQINV GGLVATTLDI RNEDFDAGRY RFSGQSPSEV
QNFGNLVAAE GGAIALLGAK VVNKGIVQAQ MGTVALGAGS DATLNFDGSK LLSVQIDQGI
VNALVSNEQL LRADGGQVLM SAKTADTLLR TVVNNQGVIE ARTLRNAAGR ISLDGHDAGT
VNVAGVLNAS ATTPGNGGMV ETRGADVKVA LGAMVDTRAT NGRVGTWRIA SSDVSVKAGA
NQPGTIVADT LSRNLATTDV ELVAERGQLS VDGPVTWASG NRLTLASRQG DVSVNGALRA
TGANARLAID AKQNVRIAAP IALTGANALL TLDYGVAHSL SGGAAVTLSG AGAGFESNGY
RYTVVQNLQQ LQAVDANLDG LYVLGNDIAG SYYYGTAFKT IGSGASFAGV FDGLGNTISN
LTIASSNAYA GLFGRNTGTL ANLNLKSLRV SAASGVGPVA IGGLVGENAG KISNVTATGM
QVSAGASRNN ALGGMVGINS GEISRTSYSG SVTGNSMSDA VGGLVGENRL DQLAGIVSDS
ESNATVSGGA SNRASIGGLV GVNRGGEILR STSRGTTSGT TSGYNLAGVN VGGLVGANLL
GKIVDGSALG RVTGGSSGTA GGFVGNNTGT ITGSSASGVV DGRYAQAIGG FVGLNQGNVA
DSKALGTVSS SSTGSTGGFV GINLGDNAFI DMAEAHGAVT GGQGANGGFV GSHLGGRIAH
AVARGKTTGG SYSKTGGFVG SNEAELANVD ASGDVSAGAG ASVGAFAGAN TRFGKIEAAS
ATGNVTGGSS STVGGFAGEN LGTMRDVSAS GTVGAGYYGA TLGGLVGVNA GLVERAAASG
RVNGSSSQTF GGLVGINRGI FRNSVTSGEA ALQKIAGLNL GVIE