| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2719 |
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| Symbol | ipk |
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| ID | 6177179 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 3017579 |
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| End bp | 3018460 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641682495 |
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| Product | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
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| Protein accession | YP_001809412 |
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| Protein GI | 172061760 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1947] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase |
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| TIGRFAM ID | [TIGR00154] 4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0000847528 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.467386 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGATT CGACCCGCTC GCTGCGCAAT TGCCTTGCGC CCGCGAAACT CAACCTGTTC
CTGCACATCA CCGGCCGTCG CCCGAACGGC TATCACGATC TGCAAAGCGT GTTCCAGTTG
CTGAACTGGG GCGACACGCT GCACTTCACG CTGCGCGACG ACGGTCGCGT CGCCCGCGTC
ACCGACGTGC CGGGCGTGCC AGAGGAAAGC GATCTCGTCG TGCGCGCGGC CAATCTGCTG
AAAGCGCATA CGGGCACCGC GGCCGGCGTC GACATCGAGA TCGACAAGTG CCTGCCGATG
GGCGCCGGCC TCGGCGGCGG CAGCTCCGAC GCGGCCACGA CGCTGCTCGC GCTGAACCGC
CTGTGGCAGC TCGACCTGTC GCGTACGGAA CTGCAATCGC TCGCGGTAAA ACTCGGCGCC
GACGTCCCGT TTTTTGTTTT TGGAAAAAAT GCGTTCGCAG AGGGTATCGG AGAAGAATTA
GCTGAGGTAG AATTGCCGAC TCGCTGGTTC CTGGTTGTGA CGCCGCGAGT TCATGTCCCC
ACCGCTGAAA TTTTTTCAGA TGAGTTGTTG ACAAGAAATA CGAAGCCAGT CACAATTGCT
GACTTTCTTG CACAGCAAAA CAGCGATGCG GGATGGCCAG ACAGTTTCGG CCGGAACGAT
ATGCAGCAAG TTGTGACAAG TAAGTACGCG GAAGTTGCGC AGGTGGTCAA ATGGTTGTAT
AATGTGACCC CCGCGAGGAT GACCGGCTCC GGAGCAAGCG TGTTTGCAGC GTTTCAAAGC
AAGCACGAGG CAGAAGCGGC GAAAGCCCAG CTGCCCACCG GTTGGAACGG TGCAGTTGCC
GAGAGCCTGA ACGAGCATCC GCTCTTCGCT TTCGCGTCAT GA
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| Protein sequence | MTDSTRSLRN CLAPAKLNLF LHITGRRPNG YHDLQSVFQL LNWGDTLHFT LRDDGRVARV
TDVPGVPEES DLVVRAANLL KAHTGTAAGV DIEIDKCLPM GAGLGGGSSD AATTLLALNR
LWQLDLSRTE LQSLAVKLGA DVPFFVFGKN AFAEGIGEEL AEVELPTRWF LVVTPRVHVP
TAEIFSDELL TRNTKPVTIA DFLAQQNSDA GWPDSFGRND MQQVVTSKYA EVAQVVKWLY
NVTPARMTGS GASVFAAFQS KHEAEAAKAQ LPTGWNGAVA ESLNEHPLFA FAS
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