Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_0402 |
Symbol | |
ID | 6177705 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 450452 |
End bp | 450967 |
Gene Length | 516 bp |
Protein Length | 171 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641680144 |
Product | type VI secretion protein |
Protein accession | YP_001807115 |
Protein GI | 172059463 |
COG category | [S] Function unknown |
COG ID | [COG3516] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03358] type VI secretion protein, VC_A0107 family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0000194603 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCAAGA AAGAAAGCAT TCAGAAAAGC TTGCAGAAAA TTCGGCCGCC GCGCGTCCAA TTGACCTACG AGGTCGAGAA GGGCGACGCG ATCGAGGTGA AGGAACTGCC GTTCGTCGTC GGGGTCGTCG GCGATCTGGC GGGCCAGTCG GAAATCGAGC AGCCGAAGCT GCGCGACCGC AAGTTCGTCA ATATCGACCG CGACAACTTC GACGACGTGA TGAAGGCGAT CGAGCCGCGC GCCGCGTTTC AGGTGGAAAA CCGCCTGAGC CCGGAAGGCG GCAAGTTCGC GGTCGACCTG AAGTTCCGTT CGCTGTCGGA TTTCAGCCCG GACGAAGTCG TCGAACAGGT CGAGCCGCTG CGCCGCCTGC TCGACGCGCG TTCGAAGCTC GCCGACCTGC GCAACAAGCT CGCCGGCAAC GACAAGCTCG AGGATCTGCT GTCGGAAGTG CTGAAGAACA CGCAGCAGCT GCAGGAGCTC GCGAAGGGCA CGGGCGGCGA CAAAGACGGC GAATGA
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Protein sequence | MAKKESIQKS LQKIRPPRVQ LTYEVEKGDA IEVKELPFVV GVVGDLAGQS EIEQPKLRDR KFVNIDRDNF DDVMKAIEPR AAFQVENRLS PEGGKFAVDL KFRSLSDFSP DEVVEQVEPL RRLLDARSKL ADLRNKLAGN DKLEDLLSEV LKNTQQLQEL AKGTGGDKDG E
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