Gene BamMC406_0402 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_0402 
Symbol 
ID6177705 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp450452 
End bp450967 
Gene Length516 bp 
Protein Length171 aa 
Translation table11 
GC content62% 
IMG OID641680144 
Producttype VI secretion protein 
Protein accessionYP_001807115 
Protein GI172059463 
COG category[S] Function unknown 
COG ID[COG3516] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03358] type VI secretion protein, VC_A0107 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000194603 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCAAGA AAGAAAGCAT TCAGAAAAGC TTGCAGAAAA TTCGGCCGCC GCGCGTCCAA 
TTGACCTACG AGGTCGAGAA GGGCGACGCG ATCGAGGTGA AGGAACTGCC GTTCGTCGTC
GGGGTCGTCG GCGATCTGGC GGGCCAGTCG GAAATCGAGC AGCCGAAGCT GCGCGACCGC
AAGTTCGTCA ATATCGACCG CGACAACTTC GACGACGTGA TGAAGGCGAT CGAGCCGCGC
GCCGCGTTTC AGGTGGAAAA CCGCCTGAGC CCGGAAGGCG GCAAGTTCGC GGTCGACCTG
AAGTTCCGTT CGCTGTCGGA TTTCAGCCCG GACGAAGTCG TCGAACAGGT CGAGCCGCTG
CGCCGCCTGC TCGACGCGCG TTCGAAGCTC GCCGACCTGC GCAACAAGCT CGCCGGCAAC
GACAAGCTCG AGGATCTGCT GTCGGAAGTG CTGAAGAACA CGCAGCAGCT GCAGGAGCTC
GCGAAGGGCA CGGGCGGCGA CAAAGACGGC GAATGA
 
Protein sequence
MAKKESIQKS LQKIRPPRVQ LTYEVEKGDA IEVKELPFVV GVVGDLAGQS EIEQPKLRDR 
KFVNIDRDNF DDVMKAIEPR AAFQVENRLS PEGGKFAVDL KFRSLSDFSP DEVVEQVEPL
RRLLDARSKL ADLRNKLAGN DKLEDLLSEV LKNTQQLQEL AKGTGGDKDG E