44 homologs were found in PanDaTox collection
for query gene Gbem_1413 on replicon NC_011146
Organism: Geobacter bemidjiensis Bem



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_012918  GM21_2867  Benzoyl-CoA reductase  92.77 
 
 		 415 aa  807    Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_011146  Gbem_1413  2-hydroxyglutaryl-CoA dehydratase D-component  100 
 
 		 415 aa  860    Geobacter bemidjiensis Bem  Bacteria  normal  0.657921  n/a   
 
 
-
 
NC_011830  Dhaf_3453  2-hydroxyglutaryl-CoA dehydratase D-component  32.61 
 
 		 409 aa  232  1e-59  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_009943  Dole_1685  2-hydroxyglutaryl-CoA dehydratase D-component  28.25 
 
 		 424 aa  169  9e-41  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.00000455282  n/a   
 
 
-
 
NC_009943  Dole_0931  2-hydroxyglutaryl-CoA dehydratase D-component  26.46 
 
 		 419 aa  167  2.9999999999999998e-40  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_007958  RPD_1537  benzoyl-CoA reductase, subunit B  28.68 
 
 		 436 aa  155  1e-36  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_0725  benzoyl-CoA reductase, subunit B  28.35 
 
 		 436 aa  152  1e-35  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0743165  n/a   
 
 
-
 
NC_007925  RPC_1028  benzoyl-CoA reductase, subunit B  27.89 
 
 		 436 aa  150  3e-35  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.659729  normal  1 
 
 
-
 
NC_011662  Tmz1t_2950  benzoyl-CoA reductase, subunit B  27.11 
 
 		 432 aa  145  9e-34  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_011899  Hore_16080  2-hydroxyglutaryl-CoA dehydratase D-component  24.74 
 
 		 426 aa  110  6e-23  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_010814  Glov_2400  2-hydroxyglutaryl-CoA dehydratase D-component  26.45 
 
 		 425 aa  108  2e-22  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_011661  Dtur_1746  2-hydroxyglutaryl-CoA dehydratase D-component  24.87 
 
 		 408 aa  87.4  4e-16  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
NC_010718  Nther_1771  2-hydroxyglutaryl-CoA dehydratase D-component  23.02 
 
 		 419 aa  84.3  0.000000000000004  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  0.433973 
 
 
-
 
NC_010320  Teth514_1899  2-hydroxyglutaryl-CoA dehydratase, D-component  21.3 
 
 		 416 aa  80.9  0.00000000000004  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_013385  Adeg_1707  2-hydroxyglutaryl-CoA dehydratase D-component  25.79 
 
 		 415 aa  79.3  0.0000000000001  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_012034  Athe_0199  2-hydroxyglutaryl-CoA dehydratase D-component  20.1 
 
 		 416 aa  78.2  0.0000000000003  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000602439  n/a   
 
 
-
 
NC_007644  Moth_1006  2-hydroxyglutaryl-CoA dehydratase, D-component  24.04 
 
 		 421 aa  70.9  0.00000000004  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0695891  hitchhiker  0.000177823 
 
 
-
 
NC_009715  CCV52592_0873  2-hydroxyglutaryl-CoA dehydratase, D-component  25.82 
 
 		 385 aa  62  0.00000002  Campylobacter curvus 525.92  Bacteria  normal  1  n/a   
 
 
-
 
NC_011883  Ddes_0545  2-hydroxyglutaryl-CoA dehydratase D-component  23.29 
 
 		 379 aa  61.2  0.00000003  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  1  n/a   
 
 
-
 
NC_009943  Dole_2775  2-hydroxyglutaryl-CoA dehydratase D-component  23.42 
 
 		 469 aa  60.1  0.00000006  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_011830  Dhaf_1100  2-hydroxyglutaryl-CoA dehydratase D-component  27.23 
 
 		 436 aa  59.3  0.0000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_011832  Mpal_1311  2-hydroxyglutaryl-CoA dehydratase D-component  22.07 
 
 		 388 aa  57  0.0000005  Methanosphaerula palustris E1-9c  Archaea  normal  0.522959  normal  1 
 
 
-
 
NC_009943  Dole_2770  2-hydroxyglutaryl-CoA dehydratase D-component  24.02 
 
 		 466 aa  56.2  0.000001  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_011146  Gbem_2040  2-hydroxyglutaryl-CoA dehydratase D-component  22.95 
 
 		 401 aa  52.4  0.00001  Geobacter bemidjiensis Bem  Bacteria  normal  0.921137  n/a   
 
 
-
 
NC_009943  Dole_0892  2-hydroxyglutaryl-CoA dehydratase D-component  22.83 
 
 		 481 aa  51.6  0.00002  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_002939  GSU2519  (R)-2-hydroxyglutaryl-CoA dehydratase beta-subunit, putative  25 
 
 		 387 aa  52  0.00002  Geobacter sulfurreducens PCA  Bacteria  normal  0.321633  n/a   
 
 
-
 
NC_011832  Mpal_1137  2-hydroxyglutaryl-CoA dehydratase D-component  24.65 
 
 		 494 aa  50.4  0.00005  Methanosphaerula palustris E1-9c  Archaea  normal  0.417243  normal  1 
 
 
-
 
NC_007925  RPC_2056  2-hydroxyglutaryl-CoA dehydratase, D-component  21.43 
 
 		 405 aa  50.4  0.00006  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  0.727818 
 
 
-
 
NC_008554  Sfum_3161  2-hydroxyglutaryl-CoA dehydratase, D-component  24.17 
 
 		 382 aa  50.1  0.00007  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009483  Gura_3878  2-hydroxyglutaryl-CoA dehydratase, D-component  23.4 
 
 		 472 aa  49.7  0.0001  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_013517  Sterm_1694  2-hydroxyglutaryl-CoA dehydratase D-component  21.43 
 
 		 382 aa  47.4  0.0005  Sebaldella termitidis ATCC 33386  Bacteria  normal  1  n/a   
 
 
-
 
NC_009135  MmarC5_0834  2-hydroxyglutaryl-CoA dehydratase, D-component  20.85 
 
 		 373 aa  47  0.0006  Methanococcus maripaludis C5  Archaea  normal  1  n/a   
 
 
-
 
NC_008346  Swol_0412  (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative  20.96 
 
 		 424 aa  46.6  0.0009  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  1  n/a   
 
 
-
 
NC_009975  MmarC6_1821  2-hydroxyglutaryl-CoA dehydratase D-component  22.03 
 
 		 373 aa  45.8  0.001  Methanococcus maripaludis C6  Archaea  normal  1  n/a   
 
 
-
 
NC_013385  Adeg_1708  2-hydroxyglutaryl-CoA dehydratase D-component  28.44 
 
 		 322 aa  46.2  0.001  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009637  MmarC7_0081  2-hydroxyglutaryl-CoA dehydratase D-component  21.28 
 
 		 373 aa  45.4  0.002  Methanococcus maripaludis C7  Archaea  hitchhiker  0.00790728  hitchhiker  0.00027984 
 
 
-
 
NC_009635  Maeo_1346  2-hydroxyglutaryl-CoA dehydratase D-component  22.94 
 
 		 372 aa  45.8  0.002  Methanococcus aeolicus Nankai-3  Archaea  normal  0.120946  n/a   
 
 
-
 
NC_007644  Moth_1446  2-hydroxyglutaryl-CoA dehydratase, D-component  26.9 
 
 		 381 aa  44.7  0.003  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.629308  normal  0.054659 
 
 
-
 
NC_010718  Nther_0828  2-hydroxyglutaryl-CoA dehydratase D-component  26.47 
 
 		 393 aa  44.3  0.004  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  hitchhiker  0.0000331904 
 
 
-
 
NC_013522  Taci_0254  2-hydroxyglutaryl-CoA dehydratase D-component  21.16 
 
 		 423 aa  44.3  0.004  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  1  n/a   
 
 
-
 
NC_007644  Moth_1007  2-hydroxyglutaryl-CoA dehydratase, D-component  22.42 
 
 		 349 aa  43.5  0.006  Moorella thermoacetica ATCC 39073  Bacteria  decreased coverage  0.0000000530359  hitchhiker  0.000167288 
 
 
-
 
NC_013170  Ccur_11360  Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB  25.95 
 
 		 426 aa  43.5  0.006  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.390545  normal  0.8731 
 
 
-
 
NC_011832  Mpal_1146  2-hydroxyglutaryl-CoA dehydratase D-component  24.03 
 
 		 501 aa  43.1  0.009  Methanosphaerula palustris E1-9c  Archaea  normal  0.114062  normal  1 
 
 
-
 
NC_010718  Nther_1772  2-hydroxyglutaryl-CoA dehydratase D-component  31.37 
 
 		 358 aa  43.1  0.009  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  0.39587 
 
 
-
 
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