23 homologs were found in PanDaTox collection
for query gene Bind_3021 on replicon NC_010581
Organism: Beijerinckia indica subsp. indica ATCC 9039



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010581  Bind_3021  transcription activator effector binding  100 
 
 
219 aa  447  1e-125  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_1851  transcription activator effector binding  58.76 
 
 
241 aa  203  2e-51  Methylocella silvestris BL2  Bacteria  n/a    normal  0.493771 
 
 
-
 
NC_011894  Mnod_0182  transcription activator effector binding  46.63 
 
 
236 aa  157  1e-37  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_3657  transcription activator effector binding  43.48 
 
 
259 aa  151  8e-36  Methylobacterium sp. 4-46  Bacteria  normal  0.217912  hitchhiker  0.00540131 
 
 
-
 
NC_010505  Mrad2831_5334  transcription activator effector binding  40.72 
 
 
255 aa  145  4.0000000000000006e-34  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.313635  normal 
 
 
-
 
NC_010172  Mext_2719  transcription activator effector binding  42.77 
 
 
257 aa  140  1.9999999999999998e-32  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2946  transcription activator effector binding  42.2 
 
 
298 aa  138  7.999999999999999e-32  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.433346  hitchhiker  0.00143394 
 
 
-
 
NC_007958  RPD_0513  transcription activator, effector binding  39.11 
 
 
268 aa  134  9.999999999999999e-31  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.482512  normal 
 
 
-
 
NC_010725  Mpop_2841  transcription activator effector binding  41.95 
 
 
249 aa  134  9.999999999999999e-31  Methylobacterium populi BJ001  Bacteria  normal  0.491142  normal  0.203894 
 
 
-
 
NC_009485  BBta_0371  hypothetical protein  44 
 
 
240 aa  129  5.0000000000000004e-29  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.548098  normal  0.611025 
 
 
-
 
NC_011004  Rpal_0250  transcription activator effector binding  39.58 
 
 
260 aa  126  2.0000000000000002e-28  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.495724  n/a   
 
 
-
 
NC_007778  RPB_0358  transcription activator, effector binding  39.6 
 
 
243 aa  124  1e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.923721  normal 
 
 
-
 
NC_007925  RPC_0216  transcription activator, effector binding  40.27 
 
 
252 aa  123  2e-27  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.05327  hitchhiker  0.00731322 
 
 
-
 
NC_007964  Nham_3576  transcription activator, effector binding  37.7 
 
 
242 aa  118  9e-26  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_2777  transcription activator, effector binding  39.01 
 
 
242 aa  117  9.999999999999999e-26  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0772774  normal 
 
 
-
 
NC_009720  Xaut_0410  transcription activator effector binding  35.03 
 
 
227 aa  105  5e-22  Xanthobacter autotrophicus Py2  Bacteria  normal  0.122194  normal  0.857811 
 
 
-
 
NC_011059  Paes_0318  transcription activator effector binding  27.4 
 
 
157 aa  52.8  0.000004  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.289482 
 
 
-
 
NC_007955  Mbur_1206  transcription activator, effector binding  29.7 
 
 
132 aa  48.5  0.00009  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_009953  Sare_4810  transcription activator effector binding  23.31 
 
 
274 aa  47  0.0002  Salinispora arenicola CNS-205  Bacteria  normal  0.858088  normal 
 
 
-
 
NC_008639  Cpha266_0304  transcription activator, effector binding  26.25 
 
 
158 aa  45.8  0.0004  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_3767  transcriptional regulator, MerR family  28.45 
 
 
264 aa  45.4  0.0006  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.237591  n/a   
 
 
-
 
NC_010831  Cphamn1_0345  transcription activator effector binding  24.14 
 
 
156 aa  44.7  0.001  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_0754  transcription activator, effector binding  23.08 
 
 
156 aa  42.4  0.006  Arthrobacter sp. FB24  Bacteria  normal  0.287281  n/a   
 
 
-
 
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