| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0513 |
|---|
| Symbol | |
|---|
| ID | 4020981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 585212 |
|---|
| End bp | 586018 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637960700 |
|---|
| Product | transcription activator, effector binding |
|---|
| Protein accession | YP_567652 |
|---|
| Protein GI | 91974993 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG4978] Transcriptional regulator, effector-binding domain/component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.482512 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGCC ACCGTTTTTT TCATCCCGCT CTGCTCGGGC TGCTGTCTGC CGCCGCGCTG
ACGCTGGGCG CAGCCGGCGC GCCGGCGCAA ACCGAAACCA AGCCGGCCGA AACCAAGTCC
ACCGAAACAA AGCCGGCCGA GACGACCACG CCGCCACCCG CCGCGACGAC GCCGTCTCCG
TCCACGCCTG CTCCATCGGC GGCTGCTCCG TCCACGCCTG CTCCATCGAC CGCTGCTCCG
GCGACACCAG CGCCCTCGAC CCCGCCCGCT GCGGCCGAGA CGCCTGCGAC GCCTCCGCCC
GCGGCCCAGA CGCCGGCCGT GCCGCCGGCC GCCAAGGTGC AGACCGCCGA TCCGTTCGGC
GAGGAGATCA CCCTCGCACC GAAGACGGCG GTGGTCCTGA AGGGCAAGGC CAGTTGGGAC
AACGCGTTCG AAAGCCTGAT CGAGGCCATT AAATCAGTGA CCGGCCTGCT CGAGAAGCAG
GGCATCAAGC CGAACGGCAA TCCGATGATC GTCTACACCT CGACCGACGA TAACGGCTTC
ACCTTCCAGG CCGAGATTCC GGTGCCCGAG GCGCCGAAGA ATCTGCCCAA GACCATGAGC
ATGGGGCCGA CGCCGGACGG CAAGGTGCTG AAATTCGTCC ATCGCGGCTC CTACGACAAT
ATGGACAACA CCTACGAGGC GATCACAAAT CACCTCGACG ACAAGAAGAT CGAGGCCAAG
GACACCTTCG TCGAGGAATA CATCACCGAC CCGCTGACCA CCGCGGAAGA CAAGCTTGTA
ATCAACGTCT ATGTGCCGAT GAAATGA
|
|---|
| Protein sequence | MNRHRFFHPA LLGLLSAAAL TLGAAGAPAQ TETKPAETKS TETKPAETTT PPPAATTPSP
STPAPSAAAP STPAPSTAAP ATPAPSTPPA AAETPATPPP AAQTPAVPPA AKVQTADPFG
EEITLAPKTA VVLKGKASWD NAFESLIEAI KSVTGLLEKQ GIKPNGNPMI VYTSTDDNGF
TFQAEIPVPE APKNLPKTMS MGPTPDGKVL KFVHRGSYDN MDNTYEAITN HLDDKKIEAK
DTFVEEYITD PLTTAEDKLV INVYVPMK
|
|---|
| |