15 homologs were found in PanDaTox collection
for query gene Shew_3122 on replicon NC_009092
Organism: Shewanella loihica PV-4



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009092  Shew_3122  PepSY-associated TM helix domain-containing protein  100 
 
 		 266 aa  531  1e-150  Shewanella loihica PV-4  Bacteria  normal  0.325368  unclonable  0.00000468189 
 
 
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NC_010506  Swoo_3790  PepSY-associated TM helix domain-containing protein  50.56 
 
 		 265 aa  270  1e-71  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.000212157  decreased coverage  0.000000557586 
 
 
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NC_009901  Spea_0709  PepSY-associated TM helix domain-containing protein  52.09 
 
 		 262 aa  266  2e-70  Shewanella pealeana ATCC 700345  Bacteria  normal  0.180052  n/a   
 
 
-
 
NC_009831  Ssed_3891  PepSY-associated TM helix domain-containing protein  48.39 
 
 		 281 aa  249  5e-65  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0337067  hitchhiker  0.00968624 
 
 
-
 
NC_007954  Sden_0640  PepSY-associated TM helix  43.96 
 
 		 269 aa  229  3e-59  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.000432341  n/a   
 
 
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NC_008700  Sama_0587  PepSY-associated TM helix  44.32 
 
 		 252 aa  214  1.9999999999999998e-54  Shewanella amazonensis SB2B  Bacteria  normal  0.191213  decreased coverage  0.000115238 
 
 
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NC_009052  Sbal_2016  PepSY-associated TM helix domain-containing protein  44.49 
 
 		 266 aa  208  9e-53  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_4033  PepSY-associated TM helix domain-containing protein  44.15 
 
 		 253 aa  202  3e-51  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_003910  CPS_4600  hypothetical protein  32.57 
 
 		 259 aa  160  2e-38  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_007912  Sde_2435  hypothetical protein  30.49 
 
 		 261 aa  130  2.0000000000000002e-29  Saccharophagus degradans 2-40  Bacteria  normal  0.0705748  normal  0.0774644 
 
 
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NC_007520  Tcr_1317  PepSY-associated TM helix  25.4 
 
 		 253 aa  72.8  0.000000000006  Thiomicrospira crunogena XCL-2  Bacteria  hitchhiker  0.00187914  n/a   
 
 
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NC_009439  Pmen_4555  PepSY-associated TM helix domain-containing protein  26.52 
 
 		 403 aa  49.3  0.00006  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007614  Nmul_A1822  PepSY-associated TM helix  37.78 
 
 		 428 aa  44.3  0.002  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.646512  n/a   
 
 
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NC_010682  Rpic_3345  PepSY-associated TM helix domain protein  33.33 
 
 		 258 aa  44.7  0.002  Ralstonia pickettii 12J  Bacteria  normal  1  normal  0.649992 
 
 
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NC_012856  Rpic12D_2998  PepSY-associated TM helix domain protein  33.33 
 
 		 254 aa  43.9  0.002  Ralstonia pickettii 12D  Bacteria  normal  1  normal  1 
 
 
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