| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_4033 |
|---|
| Symbol | |
|---|
| ID | 4280924 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 4810511 |
|---|
| End bp | 4811272 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638136858 |
|---|
| Product | PepSY-associated TM helix domain-containing protein |
|---|
| Protein accession | YP_752697 |
|---|
| Protein GI | 114565183 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACTAAAA CATCTCGACG TAACCGTTTT AGACTTAAGA TTTTGCGAGC CCTTCGTCCT
TGGCATCGTC GCTTAGGATT AGTGAGTGCA TTGTTTATCT TATTGTTAGT GCTTACAGGC
GTAGCAATAA ACCACAGCGA TGATTTTGGT TTAGACCAAA CACCAGTTAC CCAGTCGTGG
TTGCTTGATT ATTATGGTAT TGCTGCACCT TCTCATGTTG CTCAGTTTGG TATTGCACCG
TCTGCATTAT ATATTACCGA TAATTTGTTG TGGCAAAACC AACATATGAT TTTAGAGGCA
AATACGACCT TAATCAGTGC CAGCTATGTC GATAACATGC TGGTGGCCAT AGATGCACAG
CAATTGTATT TGTTTAATGA TCTTGGTCAA TTGCAAGAAA CTCAAAATGC CAGCACAGGT
CTTCCATCTG GTTTGTTAGC GCTAGCGATT GTAGATGGGC GGGTGTGGTT AAATACCGAC
AATGGCGTTT ATCAAGCCGA CGAACAACTC ATCGATTGGC AAGCTATTGC GCCGTTAACA
ACGCCAGTCA CTTGGCTGAG TGAAAGTGAA GTTGTGGACA AAGAGGTTGT TAATCTTGCT
CGCAGTGCTA ATTTGCATTG GCAACGTGTG ATACTCGATT TACATAGTGG ACGTTTATTT
GGTCATTTAA CGGTTTGGTT GTGGGACTTA TTTGCGCTAG CATTGTTAAT GGTATCTCTC
AGCGGTTTTT GGATTTGGTT AAAACAAAAA CCACCGAGAT AG
|
|---|
| Protein sequence | MTKTSRRNRF RLKILRALRP WHRRLGLVSA LFILLLVLTG VAINHSDDFG LDQTPVTQSW
LLDYYGIAAP SHVAQFGIAP SALYITDNLL WQNQHMILEA NTTLISASYV DNMLVAIDAQ
QLYLFNDLGQ LQETQNASTG LPSGLLALAI VDGRVWLNTD NGVYQADEQL IDWQAIAPLT
TPVTWLSESE VVDKEVVNLA RSANLHWQRV ILDLHSGRLF GHLTVWLWDL FALALLMVSL
SGFWIWLKQK PPR
|
|---|
| |