Gene Tcr_1317 details

Gene Information

• Locus tag: Tcr_1317
• ID: 3762187
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thiomicrospira crunogena XCL-2
• Kingdom: Bacteria
• Replicon accession: NC_007520
• Strand: +
• Start bp: 1433591
• End bp: 1434352
• Gene Length: 762 bp
• Protein Length: 253 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 637786049
• Product: PepSY-associated TM helix
• Protein accession: YP_391586
• Protein GI: 78485661

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.00187914
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCGCTT TATTCAAAAA ACACACCGCC AGACAATTTC ACCGTTTACT TGCGTACACG 
GTCGCTTTTC TGCTTTTTTG GTTGAGCTTG AGCGGTGTTT TATTGAACCA TACGGAAGAT 
TTAAAACTGA ATGACGTCAA GATTCAGCAA CCGTGGTTAT TAGGTTGGTA TCAAATTGAC 
ACGCCAAAAA TTCAACAGGC TTTTCAACTA AAGACTGACT GGGTCATTCA AACCTCACAA 
GCTATTTATT GGAATGAAAC CCCGCTTCCT TTTAATGGCA ACATCCGCGC TTTGGTCAAC 
AACGACTCGT TTTTGTTTAT CTTGCTTTCC AATGAATTAA TCCTACTCAC CAACACCGGT 
GATTTCATCG AGCGCATTCC GCTTCCCGAA GCTTTACAAC ATCAAAACTT AACAACTCAA 
TCGGATTTCA GTTTTTTTGA ACAAGATAAC CAAACCCTCA TCGCCACAAA AAACAACCAG 
GCCTGGCAGA TTTCTGAAGA TTTTACCCAG TTAATCCCTG TTCAAGCAGA CAACAAAGCA 
GACTGGATAA AACTCCCAAC CATCAATAAT CAAACCGCAC CAGCAGACAT CCAGAAACAG 
TTAATGAACA GCTTTGACAG CCCGCTCACA TTGGAAAAAA TTATTTTAGA ACTACACAAC 
GGCTATTTCT TTGGAAAGAT TGGCCCATGG CTGATTGATT TGGCGAGTTT ACTGTTTATC 
TTGATGGTAC TCAGCGGCAT TCGATTACAT TTAAAAAAAT GA 

 

Protein sequence

MPALFKKHTA RQFHRLLAYT VAFLLFWLSL SGVLLNHTED LKLNDVKIQQ PWLLGWYQID 
TPKIQQAFQL KTDWVIQTSQ AIYWNETPLP FNGNIRALVN NDSFLFILLS NELILLTNTG 
DFIERIPLPE ALQHQNLTTQ SDFSFFEQDN QTLIATKNNQ AWQISEDFTQ LIPVQADNKA 
DWIKLPTINN QTAPADIQKQ LMNSFDSPLT LEKIILELHN GYFFGKIGPW LIDLASLLFI 
LMVLSGIRLH LKK