| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3891 |
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| Symbol | |
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| ID | 5614176 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4754705 |
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| End bp | 4755550 |
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| Gene Length | 846 bp |
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| Protein Length | 281 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934845 |
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| Product | PepSY-associated TM helix domain-containing protein |
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| Protein accession | YP_001475623 |
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| Protein GI | 157377023 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3295] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0337067 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00968624 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATTCATA AGCATCACCA TCATCGTAAG AAAAGTCTCA GAACTCAAAT AACCAAACAG
CTTCGTCCCT GGCACCGCAG CCTTGGGGTC ATCAGCGCGC TCTTCATCTT ATTGATGGCC
CTGAGCGGCG TGCTGATTAA TCATAGCAAT CACCTCTCCA TCGATACTGC CCATGTAAAG
CAGAACTGGT TGCTGGACTA CTATGGCATC ACTCCCCCCT CTCAAATAGA TATCTACCAG
ACATCGCCAC TTAAGCTTGC CAGTTCAGAT AACCTTATCT GGATAGACAA TCGACTCGCC
GTCGAAGCCG ATTCATCGAT TAAGGGAATG TTATCTCTGG GCAGAATGCT GATCGCCGTC
GACAGTAGCA ACCTCTACCT GCTCTCGAAA GAGGGCGAGG TGTTAGAGAA ACAGGATGCC
TCGACCGGGC TGCCAAGAGG AATTGAGGCT ATCGGCTTTG ATGAGCAGGT TTGGTTAAAC
ACTACTGCCG GCACCTTTAT GGCCGACAAT GACCTTATCG AGTGGAATCA GACTCAGCCA
TTTGCCCCGA TAGCCTGGAC CGTACCACTT ACGGCCGATA GCGATGAGAT TATTATCAGC
GTGACAGATG AGCGTGAGGC GATCGCCCTG CAAGCCCGCT CGCACCATCT CACCTGGGAG
CGCGTCCTGC TGGATATCCA CAGCGGGCGC TTCTTCGGTA GCTTAGGCCC TTGGTTTATG
GATCTGGTGG CGCTGGCACT GATCATCATG GCCATATCCG GCATTTATAT CTGGCAACAG
CAGAAACCTA AGAAAAGGAA GAGAAAGGTT CGGGGTCCGA GATCTGAGGA TCAAGAAGAG
CGTTAA
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| Protein sequence | MIHKHHHHRK KSLRTQITKQ LRPWHRSLGV ISALFILLMA LSGVLINHSN HLSIDTAHVK
QNWLLDYYGI TPPSQIDIYQ TSPLKLASSD NLIWIDNRLA VEADSSIKGM LSLGRMLIAV
DSSNLYLLSK EGEVLEKQDA STGLPRGIEA IGFDEQVWLN TTAGTFMADN DLIEWNQTQP
FAPIAWTVPL TADSDEIIIS VTDEREAIAL QARSHHLTWE RVLLDIHSGR FFGSLGPWFM
DLVALALIIM AISGIYIWQQ QKPKKRKRKV RGPRSEDQEE R
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