85 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Taci_0007  CDS  NC_013522  7969  8361  +  393  Superoxide reductase  YP_003316530  decreased coverage  0.000102627  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0120  CDS  NC_013522  128023  129216  +  1194  hypothetical protein  YP_003316642  decreased coverage  0.00539968  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0133  CDS  NC_013522  141403  143073  -  1671  methyl-accepting chemotaxis sensory transducer  YP_003316655  decreased coverage  0.00116705  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0436  CDS  NC_013522  468038  468727  +  690  transcriptional regulator, Crp/Fnr family  YP_003316955  decreased coverage  0.00000632498  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0437  CDS  NC_013522  468753  469424  +  672  protein of unknown function DUF969  YP_003316956  decreased coverage  0.00000406355  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0438  CDS  NC_013522  469427  470338  +  912  protein of unknown function DUF979  YP_003316957  decreased coverage  0.00000727696  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0441  CDS  NC_013522  471909  473471  +  1563  5'-Nucleotidase domain protein  YP_003316959  decreased coverage  0.0000373841  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0447  CDS  NC_013522  476504  477226  +  723  Citrate synthase-like protein  YP_003316965  decreased coverage  0.00000621018  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0470  CDS  NC_013522  499527  499997  +  471  NADH dehydrogenase (ubiquinone) 24 kDa subunit  YP_003316988  decreased coverage  0.000044174  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0471  CDS  NC_013522  499994  501856  +  1863  NADH dehydrogenase (quinone)  YP_003316989  decreased coverage  0.00000177124  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0496  CDS  NC_013522  526261  528972  +  2712  processing peptidase  YP_003317014  decreased coverage  0.000425054  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0497  CDS  NC_013522  529035  530417  -  1383  FAD dependent oxidoreductase  YP_003317015  decreased coverage  0.000000325665  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0498  CDS  NC_013522  530636  531118  +  483  transcriptional regulator, MarR family  YP_003317016  decreased coverage  0.0000000167628  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0499  CDS  NC_013522  531164  531958  +  795  Methyltransferase type 11  YP_003317017  decreased coverage  0.000000709402  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0567  CDS  NC_013522  606317  607222  -  906  Pyridoxal-5'-phosphate-dependent protein beta subunit  YP_003317085  decreased coverage  0.000000159646  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0581  CDS  NC_013522  618486  619757  +  1272  histidyl-tRNA synthetase  YP_003317099  decreased coverage  0.0000550057  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0635  CDS  NC_013522  669465  670601  +  1137  Extracellular ligand-binding receptor  YP_003317153  decreased coverage  0.0000043194  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0636  CDS  NC_013522  670674  671567  +  894  inner-membrane translocator  YP_003317154  decreased coverage  0.00000266086  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0649  CDS  NC_013522  686491  686787  +  297  hypothetical protein  YP_003317167  decreased coverage  0.00741918  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0658  CDS  NC_013522  693778  694965  +  1188  hypothetical protein  YP_003317176  decreased coverage  0.00000316977  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0681  CDS  NC_013522  718945  719160  -  216  hypothetical protein  YP_003317199  decreased coverage  0.00000119094  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0682  CDS  NC_013522  719288  719728  +  441  outer membrane chaperone Skp (OmpH)  YP_003317200  decreased coverage  0.00000296177  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0683  CDS  NC_013522  719834  720568  -  735  ABC transporter related protein  YP_003317201  decreased coverage  0.0000101053  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0712    NC_013522  744420  745161  -  742      decreased coverage  0.00000666136  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0753  CDS  NC_013522  785540  786772  +  1233  argininosuccinate synthase  YP_003317268  decreased coverage  0.0000488823  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0754  CDS  NC_013522  786839  787798  -  960  Radical SAM domain protein  YP_003317269  decreased coverage  0.00145958  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0764  CDS  NC_013522  797162  797881  -  720  phosphoribosylaminoimidazole- succinocarboxamides ynthase  YP_003317279  decreased coverage  0.000000689611  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0782  CDS  NC_013522  813474  814547  +  1074  GTP-binding proten HflX  YP_003317297  decreased coverage  0.0000937101  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0783  CDS  NC_013522  814602  815477  +  876  domain of unknown function DUF1732  YP_003317298  decreased coverage  0.0000478658  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0792  CDS  NC_013522  822558  822803  +  246  glutaredoxin-like protein, YruB-family  YP_003317307  decreased coverage  0.0000000191922  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0844  CDS  NC_013522  878705  879157  -  453  ferric uptake regulator, Fur family  YP_003317359  decreased coverage  0.0000126283  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0845  CDS  NC_013522  880251  880682  +  432  Protein-tyrosine phosphatase, low molecular weight  YP_003317360  decreased coverage  0.0000114358  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0876  CDS  NC_013522  915923  917308  +  1386  cell division protein FtsA  YP_003317391  decreased coverage  0.000000980071  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0877  CDS  NC_013522  917372  918583  +  1212  cell division protein FtsZ  YP_003317392  decreased coverage  0.00000347279  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0878  CDS  NC_013522  918611  920140  +  1530  Radical SAM domain protein  YP_003317393  decreased coverage  0.000000778999  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0896  CDS  NC_013522  938508  938786  -  279  ribosomal protein L27  YP_003317411  decreased coverage  0.000000144427  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0897  CDS  NC_013522  938770  939111  -  342  protein of unknown function DUF464  YP_003317412  decreased coverage  0.0000000186399  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0931  CDS  NC_013522  973116  974189  -  1074  1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase  YP_003317445  decreased coverage  0.00000195204  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_0958  CDS  NC_013522  1003190  1005145  -  1956  ATPase associated with various cellular activities AAA_5  YP_003317472  decreased coverage  0.00000872782  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1040  CDS  NC_013522  1085355  1085801  -  447  protein of unknown function DUF322  YP_003317554  decreased coverage  0.000000237836  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1041  CDS  NC_013522  1085849  1086265  -  417  hypothetical protein  YP_003317555  decreased coverage  0.00000875805  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1158  CDS  NC_013522  1212502  1212879  -  378  ribosomal protein S13  YP_003317672  decreased coverage  0.000034359  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1159  CDS  NC_013522  1212887  1213012  -  126  ribosomal protein L36  YP_003317673  decreased coverage  0.0000129575  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1211  CDS  NC_013522  1259752  1260387  -  636  beta-lactamase domain protein  YP_003317725  decreased coverage  0.000331215  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1219  CDS  NC_013522  1267958  1268587  -  630  CoA-binding domain protein  YP_003317733  decreased coverage  0.00000061208  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1221  CDS  NC_013522  1269045  1269314  -  270  RNA-binding S4 domain protein  YP_003317735  decreased coverage  0.000000180321  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1222  CDS  NC_013522  1269382  1270446  -  1065  hypothetical protein  YP_003317736  decreased coverage  0.00000273501  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1296  CDS  NC_013522  1351259  1351834  -  576  hypothetical protein  YP_003317809  decreased coverage  0.0000000977751  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1297  CDS  NC_013522  1351903  1352466  -  564  RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily  YP_003317810  decreased coverage  0.0000000823001  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1299  CDS  NC_013522  1353505  1354896  -  1392  argininosuccinate lyase  YP_003317812  decreased coverage  0.00000094319  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1345  CDS  NC_013522  1393846  1395180  -  1335  gid protein  YP_003317858  decreased coverage  0.00000692081  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1346  CDS  NC_013522  1395170  1397296  -  2127  DNA topoisomerase I  YP_003317859  decreased coverage  0.0000122971  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1358  CDS  NC_013522  1405301  1406095  +  795  thiazole biosynthesis enzyme  YP_003317871  decreased coverage  0.000774298  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1388  CDS  NC_013522  1442920  1444308  -  1389  radical SAM enzyme, Cfr family  YP_003317901  decreased coverage  0.0000126812  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1389  CDS  NC_013522  1444341  1445624  -  1284  Glycine hydroxymethyltransferase  YP_003317902  decreased coverage  0.00000692081  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1446  CDS  NC_013522  1503126  1504196  -  1071  hypothetical protein  YP_003317958  decreased coverage  0.0000192739  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1447  CDS  NC_013522  1504277  1505866  -  1590  peptidase U34 dipeptidase  YP_003317959  decreased coverage  0.000509419  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1460  CDS  NC_013522  1521808  1522665  -  858  transcriptional antiterminator, BglG  YP_003317972  decreased coverage  0.000872173  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1527  CDS  NC_013522  1596652  1597050  -  399  ribosomal protein S9  YP_003318030  decreased coverage  0.00000273794  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1528  CDS  NC_013522  1597071  1597508  -  438  ribosomal protein L13  YP_003318031  decreased coverage  0.00000350375  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1529  CDS  NC_013522  1597633  1598682  -  1050  Quinolinate phosphoribosyl transferase  YP_003318032  decreased coverage  0.0000228999  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1530  CDS  NC_013522  1598710  1598961  -  252  preprotein translocase, SecG subunit  YP_003318033  decreased coverage  0.00000261791  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1548  CDS  NC_013522  1618913  1620472  -  1560  serine dehydratase alpha chain  YP_003318051  decreased coverage  0.00000153411  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1636  CDS  NC_013522  1705199  1706059  -  861  Shikimate dehydrogenase substrate binding domain protein  YP_003318132  decreased coverage  0.00000880368  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1637  CDS  NC_013522  1706056  1707366  -  1311  3-phosphoshikimate 1-carboxyvinyltransferase  YP_003318133  decreased coverage  0.0000301219  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1639  CDS  NC_013522  1708187  1709227  -  1041  phospho-2-dehydro-3-deoxyheptonate aldolase  YP_003318135  decreased coverage  0.000000169199  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1658  CDS  NC_013522  1730101  1731234  -  1134  recA protein  YP_003318154  decreased coverage  0.0000206716  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1698  CDS  NC_013522  1778875  1780260  -  1386  serine/threonine protein kinase  YP_003318194  decreased coverage  0.00790624  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1713  CDS  NC_013522  1794681  1795835  +  1155  Radical SAM domain protein  YP_003318209  decreased coverage  0.00398016  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1714  CDS  NC_013522  1796105  1796875  +  771  transcriptional regulator, DeoR family  YP_003318210  decreased coverage  0.0085463  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1741  CDS  NC_013522  1824799  1825722  +  924  cation diffusion facilitator family transporter  YP_003318237  decreased coverage  0.00244826  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_1759  CDS  NC_013522  1841547  1842278  +  732  hypothetical protein  YP_003318255  decreased coverage  0.00000621018  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_R0013  tRNA  NC_013522  879262  879336  +  75  tRNA-Ala    decreased coverage  0.00000441273  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_R0014  tRNA  NC_013522  879349  879426  +  78  tRNA-Pro    decreased coverage  0.00000480713  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_R0015  tRNA  NC_013522  879440  879516  +  77  tRNA-Gly    decreased coverage  0.00000519668  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_R0016  tRNA  NC_013522  879534  879610  +  77  tRNA-Arg    decreased coverage  0.00000514764  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_R0017  tRNA  NC_013522  879624  879700  +  77  tRNA-His    decreased coverage  0.00000497759  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_R0018  tRNA  NC_013522  879721  879796  +  76  tRNA-Arg    decreased coverage  0.00000528633  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_R0019  tRNA  NC_013522  879813  879888  +  76  tRNA-Lys    decreased coverage  0.00000484995  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_R0020  tRNA  NC_013522  879906  879989  +  84  tRNA-Leu    decreased coverage  0.00000445205  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_R0021  tRNA  NC_013522  880019  880094  +  76  tRNA-Lys    decreased coverage  0.00000445205  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_R0022  tRNA  NC_013522  880782  880869  +  88  tRNA-Leu    decreased coverage  0.0000036656  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_R0023  tRNA  NC_013522  880880  880956  +  77  tRNA-Met    decreased coverage  0.00000339625  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_R0041  tRNA  NC_013522  1353308  1353383  -  76  tRNA-Glu    decreased coverage  0.0000000119319  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
-
 
Taci_R0042  tRNA  NC_013522  1353396  1353471  -  76  tRNA-Lys    decreased coverage  0.0000000118118  n/a    Thermanaerovibrio acidaminovorans DSM 6589  Bacteria 
 
 
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