22 homologs were found in PanDaTox collection
for query gene VC0395_1064 on replicon NC_009456
Organism: Vibrio cholerae O395



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009456  VC0395_1064  helix-turn-helix domain-containing protein  100 
 
 		 112 aa  225  2e-58  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_3250  helix-hairpin-helix DNA-binding motif-containing protein  40 
 
 		 189 aa  45.8  0.0002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.653673  normal  1 
 
 
-
 
NC_010505  Mrad2831_5730  XRE family transcriptional regulator  40 
 
 		 239 aa  44.7  0.0005  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004578  PSPTO_3469  DNA-binding protein  38.46 
 
 		 189 aa  43.9  0.0007  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.162788  n/a   
 
 
-
 
NC_011830  Dhaf_0775  transcriptional regulator, XRE family  42 
 
 		 622 aa  43.9  0.0008  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000679131  n/a   
 
 
-
 
NC_011898  Ccel_3316  transcriptional regulator, XRE family  35.59 
 
 		 60 aa  42.4  0.002  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.000216063  n/a   
 
 
-
 
NC_014165  Tbis_0300  helix-turn-helix domain-containing protein  32.81 
 
 		 370 aa  42  0.003  Thermobispora bispora DSM 43833  Bacteria  normal  0.193502  normal  1 
 
 
-
 
NC_010424  Daud_2104  helix-turn-helix domain-containing protein  34.88 
 
 		 95 aa  42  0.003  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0694198  n/a   
 
 
-
 
NC_007955  Mbur_0512  XRE family transcriptional regulator  40.35 
 
 		 185 aa  41.6  0.004  Methanococcoides burtonii DSM 6242  Archaea  normal  1  n/a   
 
 
-
 
NC_011894  Mnod_6981  transcriptional regulator, XRE family  28.77 
 
 		 245 aa  41.2  0.005  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_009667  Oant_2458  XRE family transcriptional regulator  42.11 
 
 		 72 aa  40.8  0.006  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.282719  n/a   
 
 
-
 
NC_013721  HMPREF0424_0958  DNA-binding protein  28.81 
 
 		 80 aa  40.8  0.006  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  1 
 
 
-
 
NC_013947  Snas_4245  transcriptional regulator, XRE family  41.51 
 
 		 397 aa  40.4  0.007  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009664  Krad_1361  EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)  38.46 
 
 		 516 aa  40.4  0.008  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.419571  normal  0.53858 
 
 
-
 
NC_007963  Csal_0197  XRE family transcriptional regulator  47.92 
 
 		 190 aa  40.4  0.008  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0555347  n/a   
 
 
-
 
NC_007777  Francci3_4158  XRE family transcriptional regulator  38.18 
 
 		 403 aa  40.4  0.009  Frankia sp. CcI3  Bacteria  normal  0.0178123  normal  1 
 
 
-
 
NC_009675  Anae109_1444  helix-turn-helix domain-containing protein  33.96 
 
 		 68 aa  40  0.01  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.557197  normal  1 
 
 
-
 
NC_011145  AnaeK_1427  transcriptional regulator, XRE family  33.96 
 
 		 68 aa  40  0.01  Anaeromyxobacter sp. K  Bacteria  normal  1  n/a   
 
 
-
 
NC_011891  A2cp1_1522  transcriptional regulator, XRE family  33.96 
 
 		 68 aa  40  0.01  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.379498  n/a   
 
 
-
 
NC_007760  Adeh_2436  XRE family transcriptional regulator  33.96 
 
 		 68 aa  40  0.01  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.109963  n/a   
 
 
-
 
NC_013204  Elen_0910  XRE family plasmid maintenance system antidote protein  32.14 
 
 		 106 aa  40  0.01  Eggerthella lenta DSM 2243  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007498  Pcar_1457  transcriptional regulator  36.54 
 
 		 188 aa  40  0.01  Pelobacter carbinolicus DSM 2380  Bacteria  decreased coverage  2.96188e-20  n/a   
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>