More than 300 homologs were found in PanDaTox collection
for query gene RPD_0616 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007958  RPD_0616  acyl-CoA dehydrogenase-like  100 
 
 
358 aa  702    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0720  Acyl-CoA dehydrogenase-like  78.49 
 
 
358 aa  538  9.999999999999999e-153  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0811  acyl-CoA dehydrogenase domain protein  71.63 
 
 
369 aa  451  1e-125  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02412  isovaleryl-CoA dehydrogenase  33.9 
 
 
389 aa  98.6  2e-19  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.719746  n/a   
 
 
-
 
NC_008228  Patl_2925  isovaleryl-CoA dehydrogenase  32.2 
 
 
389 aa  93.6  5e-18  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3289  isovaleryl-CoA dehydrogenase  29.13 
 
 
390 aa  93.2  6e-18  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009524  PsycPRwf_2062  acyl-CoA dehydrogenase domain-containing protein  31.84 
 
 
395 aa  90.9  3e-17  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_001543  putative acyl-CoA dehydrogenase  32.73 
 
 
335 aa  90.5  4e-17  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_4184  acyl-CoA dehydrogenase domain protein  38.1 
 
 
390 aa  90.1  5e-17  Gordonia bronchialis DSM 43247  Bacteria  normal  0.948009  n/a   
 
 
-
 
NC_007958  RPD_0356  isovaleryl-CoA dehydrogenase  33.48 
 
 
392 aa  89.7  8e-17  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.969667  decreased coverage  0.00000934354 
 
 
-
 
NC_013441  Gbro_4408  acyl-CoA dehydrogenase domain protein  34.55 
 
 
394 aa  89.4  9e-17  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_2013  acyl-CoA dehydrogenase domain-containing protein  30.2 
 
 
385 aa  88.6  2e-16  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.392534  normal 
 
 
-
 
NC_009484  Acry_2188  acyl-CoA dehydrogenase domain-containing protein  34.24 
 
 
390 aa  88.2  2e-16  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_2506  isovaleryl-CoA dehydrogenase  28.08 
 
 
385 aa  88.2  2e-16  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.791052  n/a   
 
 
-
 
NC_009049  Rsph17029_1168  acyl-CoA dehydrogenase domain-containing protein  28.08 
 
 
385 aa  88.2  2e-16  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.437637  normal 
 
 
-
 
NC_003296  RS05570  acyl-CoA dehydrogenase oxidoreductase protein  32.95 
 
 
377 aa  87.4  3e-16  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.213032 
 
 
-
 
NC_003910  CPS_1603  isovaleryl-CoA dehydrogenase  32 
 
 
389 aa  87.4  3e-16  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_2327  acyl-CoA dehydrogenase  32.65 
 
 
381 aa  87.4  3e-16  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4724  acyl-CoA dehydrogenase domain protein  30.3 
 
 
390 aa  87.8  3e-16  Variovorax paradoxus S110  Bacteria  normal  0.514268  n/a   
 
 
-
 
NC_007348  Reut_B4257  butyryl-CoA dehydrogenase  35.09 
 
 
377 aa  87.4  3e-16  Ralstonia eutropha JMP134  Bacteria  normal  0.725306  n/a   
 
 
-
 
NC_011773  BCAH820_2560  acyl-CoA dehydrogenase  32.65 
 
 
381 aa  87.4  3e-16  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  4.1486499999999994e-20 
 
 
-
 
NC_007794  Saro_1645  isovaleryl-CoA dehydrogenase  29.79 
 
 
387 aa  87.4  3e-16  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2245  acyl-CoA dehydrogenase-like protein  27.85 
 
 
389 aa  87.4  4e-16  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0092  butyryl-CoA dehydrogenase  29.39 
 
 
378 aa  87  5e-16  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_4385  acyl-CoA dehydrogenase domain-containing protein  32.94 
 
 
377 aa  86.7  6e-16  Burkholderia ambifaria AMMD  Bacteria  normal  0.351154  normal  0.113053 
 
 
-
 
NC_009439  Pmen_2033  isovaleryl-CoA dehydrogenase  29.21 
 
 
387 aa  86.7  6e-16  Pseudomonas mendocina ymp  Bacteria  normal  0.0666462  normal  0.420206 
 
 
-
 
NC_004310  BR0020  isovaleryl-CoA dehydrogenase  32.09 
 
 
382 aa  86.3  7e-16  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_2547  acyl-CoA dehydrogenase  33.16 
 
 
381 aa  86.3  7e-16  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0017  isovaleryl-CoA dehydrogenase  32.09 
 
 
382 aa  86.3  7e-16  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2355  acyl-CoA dehydrogenase domain-containing protein  33.16 
 
 
381 aa  86.3  7e-16  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.774843  n/a   
 
 
-
 
NC_005945  BAS2369  acyl-CoA dehydrogenase  33.16 
 
 
381 aa  86.3  8e-16  Bacillus anthracis str. Sterne  Bacteria  normal  0.73982  n/a   
 
 
-
 
NC_009674  Bcer98_1802  acyl-CoA dehydrogenase domain-containing protein  32.14 
 
 
381 aa  86.3  8e-16  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_2548  acyl-CoA dehydrogenase  32.65 
 
 
381 aa  85.5  0.000000000000001  Bacillus cereus ATCC 10987  Bacteria  normal  0.438014  n/a   
 
 
-
 
NC_006274  BCZK2285  acyl-CoA dehydrogenase  32.65 
 
 
381 aa  85.5  0.000000000000001  Bacillus cereus E33L  Bacteria  normal  0.769883  n/a   
 
 
-
 
NC_011658  BCAH187_A2603  acyl-CoA dehydrogenase  32.65 
 
 
381 aa  85.5  0.000000000000001  Bacillus cereus AH187  Bacteria  normal  0.608519  n/a   
 
 
-
 
NC_010678  Rpic_3973  acyl-CoA dehydrogenase domain protein  32.97 
 
 
377 aa  85.9  0.000000000000001  Ralstonia pickettii 12J  Bacteria  normal  0.78306  normal  0.788161 
 
 
-
 
NC_012857  Rpic12D_4086  acyl-CoA dehydrogenase domain protein  32.97 
 
 
377 aa  85.9  0.000000000000001  Ralstonia pickettii 12D  Bacteria  normal  0.303595  normal  0.349393 
 
 
-
 
NC_008345  Sfri_2727  isovaleryl-CoA dehydrogenase  30.81 
 
 
389 aa  85.9  0.000000000000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A2511  acyl-CoA dehydrogenase  32.65 
 
 
381 aa  85.9  0.000000000000001  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_0198  acyl-CoA dehydrogenase domain protein  33.14 
 
 
387 aa  85.5  0.000000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.140883  normal  0.886093 
 
 
-
 
NC_011772  BCG9842_B2812  acyl-CoA dehydrogenase  32.65 
 
 
381 aa  85.9  0.000000000000001  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000163693 
 
 
-
 
NC_007953  Bxe_C0513  putative acyl-CoA dehydrogenase  31.53 
 
 
387 aa  85.9  0.000000000000001  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_3223  acyl-CoA dehydrogenase domain-containing protein  30.23 
 
 
389 aa  85.5  0.000000000000001  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.0153994 
 
 
-
 
NC_011146  Gbem_0543  acyl-CoA dehydrogenase domain protein  28.71 
 
 
381 aa  84.7  0.000000000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_1297  acyl-CoA dehydrogenase domain protein  27.69 
 
 
387 aa  85.1  0.000000000000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.329164  normal  0.246274 
 
 
-
 
NC_008705  Mkms_1803  acyl-CoA dehydrogenase domain-containing protein  35.29 
 
 
391 aa  84.7  0.000000000000002  Mycobacterium sp. KMS  Bacteria  normal  0.992024  normal  0.411519 
 
 
-
 
NC_009077  Mjls_1737  acyl-CoA dehydrogenase domain-containing protein  35.29 
 
 
391 aa  84.7  0.000000000000002  Mycobacterium sp. JLS  Bacteria  normal  0.375234  normal 
 
 
-
 
NC_008347  Mmar10_1739  isovaleryl-CoA dehydrogenase  29.26 
 
 
390 aa  85.1  0.000000000000002  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_5126  acyl-CoA dehydrogenase domain-containing protein  32.37 
 
 
377 aa  84.7  0.000000000000002  Burkholderia phymatum STM815  Bacteria  normal  normal  0.393324 
 
 
-
 
NC_007760  Adeh_4118  Acyl-CoA dehydrogenase  31.12 
 
 
580 aa  84.7  0.000000000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.846783  n/a   
 
 
-
 
NC_008146  Mmcs_1756  acyl-CoA dehydrogenase-like protein  35.29 
 
 
391 aa  84.7  0.000000000000002  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_3633  acyl-CoA dehydrogenase domain-containing protein  27.45 
 
 
386 aa  84.3  0.000000000000003  Paracoccus denitrificans PD1222  Bacteria  normal  0.0817586  normal  0.96391 
 
 
-
 
NC_006368  lpp1787  hypothetical protein  28.7 
 
 
389 aa  84  0.000000000000003  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1911  hypothetical protein  30.37 
 
 
375 aa  84.3  0.000000000000003  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007204  Psyc_0313  isovaleryl-CoA dehydrogenase  32.49 
 
 
395 aa  84  0.000000000000003  Psychrobacter arcticus 273-4  Bacteria  normal  0.740089  normal 
 
 
-
 
NC_009667  Oant_0037  acyl-CoA dehydrogenase domain-containing protein  33.14 
 
 
387 aa  84  0.000000000000003  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.119681  n/a   
 
 
-
 
NC_010552  BamMC406_4904  acyl-CoA dehydrogenase domain-containing protein  32.35 
 
 
377 aa  84.3  0.000000000000003  Burkholderia ambifaria MC40-6  Bacteria  normal  0.316996  normal  0.149852 
 
 
-
 
NC_010681  Bphyt_0776  acyl-CoA dehydrogenase domain protein  26.82 
 
 
396 aa  84.3  0.000000000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.567358 
 
 
-
 
NC_011004  Rpal_1804  acyl-CoA dehydrogenase domain protein  30.4 
 
 
390 aa  84  0.000000000000004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.392184  n/a   
 
 
-
 
NC_007778  RPB_3933  Acyl-CoA dehydrogenase-like  30.4 
 
 
390 aa  84  0.000000000000004  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.218287  normal 
 
 
-
 
NC_012918  GM21_0556  acyl-CoA dehydrogenase domain protein  28.04 
 
 
381 aa  84  0.000000000000004  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000000759492 
 
 
-
 
NC_009831  Ssed_1458  acyl-CoA dehydrogenase domain-containing protein  30.12 
 
 
389 aa  84  0.000000000000004  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.499178 
 
 
-
 
NC_008025  Dgeo_0428  acyl-CoA dehydrogenase-like protein  28.51 
 
 
380 aa  83.6  0.000000000000004  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.871589  normal  0.2576 
 
 
-
 
NC_008740  Maqu_2805  acyl-CoA dehydrogenase domain-containing protein  29.13 
 
 
386 aa  84  0.000000000000004  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1362  isovaleryl-CoA dehydrogenase  29.48 
 
 
389 aa  83.6  0.000000000000005  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.431847 
 
 
-
 
NC_011894  Mnod_1268  acyl-CoA dehydrogenase domain protein  28.88 
 
 
413 aa  83.6  0.000000000000005  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.831834  n/a   
 
 
-
 
NC_007348  Reut_B4563  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal  26.44 
 
 
387 aa  83.6  0.000000000000005  Ralstonia eutropha JMP134  Bacteria  normal  0.131003  n/a   
 
 
-
 
NC_007802  Jann_1327  acyl-CoA dehydrogenase-like  33.73 
 
 
383 aa  83.6  0.000000000000005  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007969  Pcryo_0344  acyl-CoA dehydrogenase-like  32.49 
 
 
395 aa  83.6  0.000000000000005  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_4074  acyl-CoA dehydrogenase-like protein  32.39 
 
 
386 aa  83.6  0.000000000000005  Cupriavidus metallidurans CH34  Bacteria  normal  0.0382192  normal 
 
 
-
 
NC_010676  Bphyt_5650  acyl-CoA dehydrogenase domain protein  32.75 
 
 
377 aa  83.6  0.000000000000005  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009376  Pars_0456  butyryl-CoA dehydrogenase  30.77 
 
 
410 aa  83.2  0.000000000000006  Pyrobaculum arsenaticum DSM 13514  Archaea  normal  0.820933  normal 
 
 
-
 
NC_007511  Bcep18194_B0714  Acyl-CoA dehydrogenase  31.38 
 
 
377 aa  83.2  0.000000000000006  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4190  isovaleryl-CoA dehydrogenase  32.11 
 
 
393 aa  83.2  0.000000000000006  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5323  acyl-CoA dehydrogenase domain-containing protein  31.91 
 
 
377 aa  83.2  0.000000000000007  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.00118834  normal  0.0149252 
 
 
-
 
NC_007951  Bxe_A3904  putative glutaryl-CoA dehydrogenase  26.82 
 
 
396 aa  83.2  0.000000000000007  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.107167 
 
 
-
 
NC_008254  Meso_3291  acyl-CoA dehydrogenase-like  33.1 
 
 
388 aa  82.8  0.000000000000007  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0247  Acyl-CoA dehydrogenase  33.52 
 
 
378 aa  83.2  0.000000000000007  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_4963  acyl-CoA dehydrogenase domain-containing protein  31.91 
 
 
377 aa  83.2  0.000000000000007  Burkholderia cenocepacia HI2424  Bacteria  normal  0.398605  normal  0.378723 
 
 
-
 
NC_008061  Bcen_3404  acyl-CoA dehydrogenase-like  31.91 
 
 
377 aa  83.2  0.000000000000007  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_013922  Nmag_2901  acyl-CoA dehydrogenase domain protein  27.78 
 
 
379 aa  82.8  0.000000000000008  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_010511  M446_1649  acyl-CoA dehydrogenase domain-containing protein  30.05 
 
 
415 aa  82.8  0.000000000000008  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.246483 
 
 
-
 
NC_006368  lpp1922  hypothetical protein  30.21 
 
 
375 aa  82.8  0.000000000000009  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_010086  Bmul_3656  acyl-CoA dehydrogenase domain-containing protein  32.45 
 
 
377 aa  82.8  0.000000000000009  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_1375  acyl-CoA dehydrogenase domain protein  35.08 
 
 
384 aa  82.8  0.000000000000009  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_4761  acyl-CoA dehydrogenase domain-containing protein  36.31 
 
 
386 aa  82.4  0.00000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_6335  acyl-CoA dehydrogenase domain protein  34.39 
 
 
386 aa  82  0.00000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0389315  normal  0.725662 
 
 
-
 
NC_006369  lpl1788  hypothetical protein  28.25 
 
 
389 aa  82  0.00000000000001  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009485  BBta_6658  isovaleryl-CoA dehydrogenase  30.81 
 
 
390 aa  82.4  0.00000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.53503  normal 
 
 
-
 
NC_010622  Bphy_2438  acyl-CoA dehydrogenase domain-containing protein  27.91 
 
 
396 aa  82  0.00000000000001  Burkholderia phymatum STM815  Bacteria  normal  0.269814  normal 
 
 
-
 
NC_007948  Bpro_1671  acyl-CoA dehydrogenase-like  33.07 
 
 
398 aa  82.4  0.00000000000001  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_3779  isovaleryl-CoA dehydrogenase  32.53 
 
 
396 aa  82  0.00000000000001  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_013202  Hmuk_2082  acyl-CoA dehydrogenase domain protein  34.91 
 
 
376 aa  82.4  0.00000000000001  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_009784  VIBHAR_05480  acyl-CoA dehydrogenase  30.23 
 
 
389 aa  82.4  0.00000000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009720  Xaut_4272  acyl-CoA dehydrogenase domain-containing protein  31.98 
 
 
390 aa  81.3  0.00000000000002  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.0196507 
 
 
-
 
NC_011145  AnaeK_4249  acyl-CoA dehydrogenase domain protein  30.61 
 
 
580 aa  81.6  0.00000000000002  Anaeromyxobacter sp. K  Bacteria  normal  0.808927  n/a   
 
 
-
 
NC_009092  Shew_2570  acyl-CoA dehydrogenase domain-containing protein  30.12 
 
 
389 aa  81.3  0.00000000000002  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1948  isovaleryl-CoA dehydrogenase  35.19 
 
 
387 aa  81.6  0.00000000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.113187  n/a   
 
 
-
 
NC_009427  Saro_3419  acyl-CoA dehydrogenase domain-containing protein  28.44 
 
 
394 aa  81.3  0.00000000000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0350417  n/a   
 
 
-
 
NC_008701  Pisl_1436  butyryl-CoA dehydrogenase  29.78 
 
 
410 aa  81.6  0.00000000000002  Pyrobaculum islandicum DSM 4184  Archaea  normal  0.170652  hitchhiker  0.00553945 
 
 
-
 
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