22 homologs were found in PanDaTox collection
for query gene RPC_0420 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007925  RPC_0420  hypothetical protein  100 
 
 
75 aa  154  3e-37  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.865694  normal 
 
 
-
 
NC_007958  RPD_4413  hypothetical protein  69.33 
 
 
75 aa  108  2.0000000000000002e-23  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.945619  normal 
 
 
-
 
NC_011004  Rpal_5314  regulatory protein, FmdB family  68.49 
 
 
75 aa  108  3e-23  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4703  hypothetical protein  65.75 
 
 
75 aa  91.3  4e-18  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_4303  FmdB family regulatory protein  55.41 
 
 
75 aa  88.6  3e-17  Xanthobacter autotrophicus Py2  Bacteria  normal  0.224092  normal 
 
 
-
 
NC_002977  MCA0261  hypothetical protein  53.42 
 
 
77 aa  86.7  9e-17  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A3238  hypothetical protein  49.33 
 
 
80 aa  86.7  1e-16  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.882851  n/a   
 
 
-
 
NC_009485  BBta_4252  hypothetical protein  62.16 
 
 
76 aa  84.7  3e-16  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.79426  normal  0.685229 
 
 
-
 
NC_007952  Bxe_B1459  hypothetical protein  54.79 
 
 
78 aa  82.8  0.000000000000002  Burkholderia xenovorans LB400  Bacteria  normal  hitchhiker  0.00501931 
 
 
-
 
NC_011761  AFE_1501  hypothetical protein  54.05 
 
 
76 aa  78.2  0.00000000000004  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_1219  regulatory protein, FmdB family  54.05 
 
 
76 aa  78.2  0.00000000000004  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  hitchhiker  0.00000000778963 
 
 
-
 
NC_010581  Bind_2706  FmdB family regulatory protein  47.22 
 
 
79 aa  75.1  0.0000000000003  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.589032 
 
 
-
 
NC_010524  Lcho_1427  FmdB family regulatory protein  46.58 
 
 
80 aa  67.8  0.00000000004  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008781  Pnap_2352  FmdB family regulatory protein  39.73 
 
 
83 aa  58.9  0.00000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_010627  Bphy_7750  FmdB family regulatory protein  52.05 
 
 
80 aa  58.2  0.00000004  Burkholderia phymatum STM815  Bacteria  normal  0.572116  normal 
 
 
-
 
NC_011666  Msil_2310  regulatory protein, FmdB family  44.44 
 
 
78 aa  55.1  0.0000004  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0545212 
 
 
-
 
NC_011883  Ddes_1286  regulatory protein, FmdB family  45.83 
 
 
76 aa  44.3  0.0005  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.497457  n/a   
 
 
-
 
NC_011004  Rpal_0778  regulatory protein, FmdB family  36.73 
 
 
71 aa  41.2  0.005  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2391  regulatory protein, FmdB family  39.34 
 
 
109 aa  40.8  0.006  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.873408  n/a   
 
 
-
 
NC_011145  AnaeK_2303  regulatory protein, FmdB family  39.34 
 
 
109 aa  40.8  0.006  Anaeromyxobacter sp. K  Bacteria  normal  0.0327558  n/a   
 
 
-
 
NC_007517  Gmet_2576  cytochrome c family protein, putative  41.3 
 
 
162 aa  40.8  0.007  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00231924  normal 
 
 
-
 
NC_007760  Adeh_1561  hypothetical protein  39.34 
 
 
104 aa  40  0.01  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.266221  n/a   
 
 
-
 
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