25 homologs were found in PanDaTox collection
for query gene PputGB1_2701 on replicon NC_010322
Organism: Pseudomonas putida GB-1



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010322  PputGB1_2701  phytanoyl-CoA dioxygenase  100 
 
 
248 aa  509  1e-143  Pseudomonas putida GB-1  Bacteria  normal  normal  0.963654 
 
 
-
 
NC_009439  Pmen_1088  phytanoyl-CoA dioxygenase  67.08 
 
 
254 aa  329  2e-89  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.326612 
 
 
-
 
NC_012560  Avin_10130  dioxygenase  65.43 
 
 
256 aa  319  3e-86  Azotobacter vinelandii DJ  Bacteria  hitchhiker  0.00000187903  n/a   
 
 
-
 
NC_011772  BCG9842_B3404  protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin, putative  30.71 
 
 
252 aa  125  6e-28  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00000622866 
 
 
-
 
NC_009719  Plav_0852  phytanoyl-CoA dioxygenase  24.39 
 
 
265 aa  62.8  0.000000005  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_2409  phytanoyl-CoA dioxygenase  29.86 
 
 
230 aa  60.1  0.00000003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  hitchhiker  0.00937335 
 
 
-
 
NC_011004  Rpal_0445  Phytanoyl-CoA dioxygenase  26.6 
 
 
282 aa  60.1  0.00000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_11532  hypothetical protein  26.77 
 
 
273 aa  58.5  0.0000001  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.547495 
 
 
-
 
BN001301  ANIA_06818  phytanoyl-CoA dioxygenase family protein (AFU_orthologue; AFUA_8G00480)  26.29 
 
 
271 aa  58.2  0.0000001  Aspergillus nidulans FGSC A4  Eukaryota  normal  normal  0.434401 
 
 
-
 
NC_008577  Shewana3_1305  hypothetical protein  24.33 
 
 
270 aa  54.7  0.000001  Shewanella sp. ANA-3  Bacteria  normal  normal  0.96448 
 
 
-
 
NC_007925  RPC_3882  phytanoyl-CoA dioxygenase  32.85 
 
 
316 aa  53.1  0.000004  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B0569  hypothetical protein  29.05 
 
 
284 aa  51.6  0.00001  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0212  phytanoyl-CoA dioxygenase  25.3 
 
 
315 aa  48.5  0.0001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2677  phytanoyl-CoA dioxygenase  22.76 
 
 
269 aa  48.5  0.0001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.845294 
 
 
-
 
NC_009565  TBFG_13664  hypothetical protein  28 
 
 
291 aa  48.1  0.0001  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0231349 
 
 
-
 
NC_010501  PputW619_3752  phytanoyl-CoA dioxygenase  28.89 
 
 
259 aa  45.8  0.0006  Pseudomonas putida W619  Bacteria  normal  normal  0.263917 
 
 
-
 
NC_008228  Patl_3772  phytanoyl-CoA dioxygenase  23.36 
 
 
285 aa  44.7  0.001  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_1704  Phytanoyl-CoA dioxygenase  26.8 
 
 
259 aa  44.7  0.001  Pedobacter heparinus DSM 2366  Bacteria  normal  0.235452  hitchhiker  0.00714566 
 
 
-
 
NC_013947  Snas_5543  Phytanoyl-CoA dioxygenase  26.17 
 
 
282 aa  44.7  0.001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.401437  normal  0.0790883 
 
 
-
 
NC_011981  Avi_7153  hypothetical protein  28.25 
 
 
304 aa  43.1  0.004  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_29130  protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin  26.61 
 
 
289 aa  42.4  0.006  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_5728  Phytanoyl-CoA dioxygenase  30.08 
 
 
287 aa  42.4  0.007  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_3554  phytanoyl-CoA dioxygenase  22.75 
 
 
360 aa  42.4  0.008  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007509  Bcep18194_C6790  phytanoyl-CoA dioxygenase  31.63 
 
 
292 aa  42  0.009  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0067  Phytanoyl-CoA dioxygenase  25 
 
 
271 aa  42  0.009  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>