| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1088 |
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| Symbol | |
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| ID | 5108061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1224157 |
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| End bp | 1224921 |
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| Gene Length | 765 bp |
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| Protein Length | 254 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640502312 |
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| Product | phytanoyl-CoA dioxygenase |
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| Protein accession | YP_001186587 |
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| Protein GI | 146306122 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG5285] Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.326612 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAAA CCACCGACAG CCAGACCGCT GAACGACTGC AGGCCCTGCA CCAGCAGGGT
TTCGTGCTGC TGCCCGGCGT GCTGGATGCG CCGCGCGTCG CGGCAGTGCG CGCCGCCATC
GACGCCCTGC GCCCCATCCA CTGGGACTAC CAGGGCAGCC TCGATCACTA CAAGTGCGTG
TTCAACCGCG ACCCGTTCTG GCTGCCCTAC CTCGATCTGC CGCCGGTGAT CGAGCTGGCC
GAAGCGGCGC TGGGCGACGA CTGCCACGTG ATCGGCCAGA CCGCCTGGCG CTGTCATCCG
GGCTTCGTCG GCAGCGAGCT GCATCTGGAC CATCTGCCCA TGGCGCTGCC GTCAAGCCTG
CTGGACGACC CGGCCTTCGA GCTGCCGATG CAGATCTGCA CCGCCCAGCT CTACCTGAAC
GACATCGACG CCGAGCTCGC CCCCACCCGG GTGATTCCCG GCAGCCACCG CGCCGGTCGC
CCGCCCGTGG CCGGCGAGCG TGACTGGCGC GGCCGCGAGC CCGAGCCGAT CTTCTGCCGC
GCCGGCGACC TGCTGTTCTT TCGCAGCGAG CTGTGGCATG CCGGCAGCCC CAACCTGAGC
CCCACGCGCA GCCGCTACAT GCTGCAGATC CACTATGGCC GGCGCATGGT GGCGCAGAAG
TTCTCGCCCT ATCTCGCGTT TCGCTTCGAC CCGGCGGTGC TGGCCGCCTG CACGCCGCGC
CAGCGGCGCC TGCTGGGCGA ACATGCCGAG GCCGAGTACG ACTGA
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| Protein sequence | MSETTDSQTA ERLQALHQQG FVLLPGVLDA PRVAAVRAAI DALRPIHWDY QGSLDHYKCV
FNRDPFWLPY LDLPPVIELA EAALGDDCHV IGQTAWRCHP GFVGSELHLD HLPMALPSSL
LDDPAFELPM QICTAQLYLN DIDAELAPTR VIPGSHRAGR PPVAGERDWR GREPEPIFCR
AGDLLFFRSE LWHAGSPNLS PTRSRYMLQI HYGRRMVAQK FSPYLAFRFD PAVLAACTPR
QRRLLGEHAE AEYD
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