More than 300 homologs were found in PanDaTox collection
for query gene Pden_2874 on replicon NC_008687
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008687  Pden_2874  methylated-DNA--protein-cysteine methyltransferase  100 
 
 
198 aa  390  1e-108  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.396011 
 
 
-
 
NC_007802  Jann_1668  transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase  47.44 
 
 
267 aa  152  2.9999999999999998e-36  Jannaschia sp. CCS1  Bacteria  normal  0.490998  normal 
 
 
-
 
NC_009952  Dshi_3024  ADA regulatory protein  48.43 
 
 
287 aa  151  7e-36  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.697686  normal  0.421668 
 
 
-
 
NC_008044  TM1040_2450  AraC family transcriptional regulator  47.27 
 
 
283 aa  147  8e-35  Ruegeria sp. TM1040  Bacteria  normal  0.416405  normal  0.151746 
 
 
-
 
NC_009428  Rsph17025_0196  methylated-DNA--protein-cysteine methyltransferase  47.1 
 
 
282 aa  140  9.999999999999999e-33  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1032  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  47.37 
 
 
282 aa  140  9.999999999999999e-33  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.259585  n/a   
 
 
-
 
NC_009049  Rsph17029_2693  methylated-DNA--protein-cysteine methyltransferase  47.02 
 
 
282 aa  139  3e-32  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.116111 
 
 
-
 
NC_011989  Avi_3845  methylated-DNA--protein- cysteinemethyltransferase  37.21 
 
 
295 aa  122  2e-27  Agrobacterium vitis S4  Bacteria  normal  0.80027  n/a   
 
 
-
 
NC_012912  Dd1591_0948  transcriptional regulator, AraC family  41.29 
 
 
275 aa  123  2e-27  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3439  methylated-DNA/protein-cysteine methyltransferase  38.55 
 
 
290 aa  121  5e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_3373  methylated-DNA--protein-cysteine methyltransferase  39.13 
 
 
290 aa  121  8e-27  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3739  methylated-DNA/protein-cysteine methyltransferase  37.35 
 
 
290 aa  119  3.9999999999999996e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0344  transcriptional regulator, AraC family  38.51 
 
 
310 aa  118  7e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.251255  n/a   
 
 
-
 
NC_007406  Nwi_0203  methylated-DNA-(protein)-cysteine S-methyltransferase  40.48 
 
 
314 aa  117  9.999999999999999e-26  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.661415  normal  0.947991 
 
 
-
 
NC_007954  Sden_1493  methylated-DNA--protein-cysteine methyltransferase  38.32 
 
 
276 aa  117  9.999999999999999e-26  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.0000000302117  n/a   
 
 
-
 
NC_007958  RPD_0383  methylated-DNA--protein-cysteine methyltransferase  38.51 
 
 
310 aa  117  9.999999999999999e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_2691  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  54.37 
 
 
297 aa  116  1.9999999999999998e-25  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0337  AraC family transcriptional regulator  40.37 
 
 
310 aa  115  3.9999999999999997e-25  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_2813  methylated-DNA--protein-cysteine methyltransferase  40.59 
 
 
309 aa  115  5e-25  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.305284 
 
 
-
 
NC_011884  Cyan7425_4855  methylated-DNA/protein-cysteine methyltransferase  35.26 
 
 
207 aa  115  5e-25  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_3569  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  38.1 
 
 
294 aa  114  6.9999999999999995e-25  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0437  AraC family transcriptional regulator  37.89 
 
 
298 aa  114  7.999999999999999e-25  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.988834 
 
 
-
 
NC_007964  Nham_0160  AraC family transcriptional regulator  38.51 
 
 
314 aa  113  1.0000000000000001e-24  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_1575  methylated-DNA--protein-cysteine methyltransferase  34.57 
 
 
282 aa  114  1.0000000000000001e-24  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_0549  transcriptional regulator, AraC family  38.79 
 
 
289 aa  113  2.0000000000000002e-24  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.587181 
 
 
-
 
NC_008347  Mmar10_2993  AraC family transcriptional regulator  41.83 
 
 
282 aa  113  2.0000000000000002e-24  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0199  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  36.47 
 
 
299 aa  112  5e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0565  transcriptional regulator, AraC family  37.71 
 
 
286 aa  112  5e-24  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_0891  transcriptional regulator, AraC family  39.07 
 
 
280 aa  112  5e-24  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0866  methylated-DNA--protein-cysteine methyltransferase  39.07 
 
 
280 aa  111  7.000000000000001e-24  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3470  methylated-DNA--protein-cysteine methyltransferase  39.07 
 
 
280 aa  111  7.000000000000001e-24  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_2345  transcriptional regulator, AraC family  36.65 
 
 
302 aa  108  5e-23  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009654  Mmwyl1_1519  methylated-DNA--protein-cysteine methyltransferase  37.09 
 
 
280 aa  108  7.000000000000001e-23  Marinomonas sp. MWYL1  Bacteria  normal  0.0758947  normal  0.0152511 
 
 
-
 
NC_007912  Sde_3879  transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase  35.84 
 
 
293 aa  107  8.000000000000001e-23  Saccharophagus degradans 2-40  Bacteria  normal  0.612619  normal  0.1278 
 
 
-
 
NC_008687  Pden_4239  methylated-DNA--protein-cysteine methyltransferase  45.93 
 
 
353 aa  107  8.000000000000001e-23  Paracoccus denitrificans PD1222  Bacteria  normal  0.577797  normal  0.120321 
 
 
-
 
NC_013161  Cyan8802_2395  transcriptional regulator, AraC family  36.02 
 
 
300 aa  107  2e-22  Cyanothece sp. PCC 8802  Bacteria  normal  0.374624  normal 
 
 
-
 
NC_008255  CHU_3799  transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase  51.65 
 
 
282 aa  107  2e-22  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.198911 
 
 
-
 
NC_010725  Mpop_4835  transcriptional regulator, AraC family  43.15 
 
 
360 aa  106  2e-22  Methylobacterium populi BJ001  Bacteria  normal  0.0179003  normal  0.379038 
 
 
-
 
NC_013061  Phep_0314  methylated-DNA/protein-cysteine methyltransferase  36.13 
 
 
251 aa  106  3e-22  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.135594 
 
 
-
 
NC_009505  BOV_0383  ada regulatory protein  39.13 
 
 
361 aa  105  3e-22  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_0721  methylated-DNA/protein-cysteine methyltransferase  35.67 
 
 
279 aa  105  4e-22  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR0368  ada regulatory protein  38.71 
 
 
361 aa  105  5e-22  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_2118  AraC family transcriptional regulator  39.18 
 
 
366 aa  103  1e-21  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.0669009  normal 
 
 
-
 
NC_011894  Mnod_0501  transcriptional regulator, AraC family  40.97 
 
 
374 aa  103  2e-21  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.399439  n/a   
 
 
-
 
NC_013132  Cpin_2299  transcriptional regulator, AraC family  34.59 
 
 
284 aa  102  3e-21  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.015219  normal 
 
 
-
 
NC_007510  Bcep18194_A4931  AraC family transcriptional regulator  56.32 
 
 
354 aa  102  5e-21  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_0149  methylated-DNA--protein-cysteine methyltransferase  33.71 
 
 
185 aa  100  9e-21  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1042  AraC family transcriptional regulator  40.13 
 
 
370 aa  100  1e-20  Methylobacterium sp. 4-46  Bacteria  normal  0.826547  normal 
 
 
-
 
NC_007348  Reut_B4734  DNA-O6-methylguanine--protein-cysteine S-methyltransferase  42.64 
 
 
240 aa  100  1e-20  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3754  methylated-DNA--protein-cysteine methyltransferase  39.13 
 
 
178 aa  100  1e-20  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.0000285476  n/a   
 
 
-
 
NC_003295  RSc2570  bifunctional methylated-DNA--protein-cysteine methyltransferase/O-6-methylguanine-DNA transcription regulator  43.55 
 
 
360 aa  100  2e-20  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3190  O6-methylguanine-DNA methyltransferase  43.41 
 
 
358 aa  99.8  2e-20  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0476  methylated-DNA--protein-cysteine methyltransferase  36.81 
 
 
361 aa  100  2e-20  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_3765  bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase  41.86 
 
 
354 aa  100  2e-20  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_3171  AraC family transcriptional regulator  38.75 
 
 
363 aa  99.4  3e-20  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.0000000719173  decreased coverage  0.000000135353 
 
 
-
 
NC_007643  Rru_A3358  methylated-DNA--(protein)-cysteine S-methyltransferase  43.12 
 
 
202 aa  99.4  3e-20  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_1536  transcriptional regulator, AraC family  44 
 
 
366 aa  99  4e-20  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.26366 
 
 
-
 
NC_010551  BamMC406_3089  AraC family transcriptional regulator  38.12 
 
 
363 aa  99  4e-20  Burkholderia ambifaria MC40-6  Bacteria  hitchhiker  0.000000381417  hitchhiker  0.0021619 
 
 
-
 
NC_007794  Saro_2396  transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase  39.74 
 
 
343 aa  99  4e-20  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_3205  AraC family transcriptional regulator  38.12 
 
 
380 aa  99  4e-20  Burkholderia ambifaria AMMD  Bacteria  hitchhiker  0.000040374  n/a   
 
 
-
 
NC_004347  SO_3126  methylated-DNA--protein-cysteine methyltransferase  42.06 
 
 
167 aa  98.6  6e-20  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_002967  TDE0217  methylated-DNA--protein-cysteine methyltransferase  34.84 
 
 
172 aa  98.2  7e-20  Treponema denticola ATCC 35405  Bacteria  normal  0.108585  n/a   
 
 
-
 
NC_007511  Bcep18194_B2720  methylated-DNA--(protein)-cysteine S-methyltransferase  40.51 
 
 
177 aa  97.8  8e-20  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_1100  methylated-DNA--protein-cysteine methyltransferase  38.27 
 
 
174 aa  97.8  9e-20  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.111877  normal  0.691542 
 
 
-
 
NC_010338  Caul_5050  AraC family transcriptional regulator  39.38 
 
 
293 aa  97.8  1e-19  Caulobacter sp. K31  Bacteria  normal  normal  0.148414 
 
 
-
 
NC_007492  Pfl01_2938  AraC family transcriptional regulator  41.86 
 
 
357 aa  97.1  1e-19  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2539  AraC family transcriptional regulator  38.89 
 
 
363 aa  97.4  1e-19  Burkholderia cenocepacia AU 1054  Bacteria  hitchhiker  0.0000057895  n/a   
 
 
-
 
NC_009052  Sbal_2799  methylated-DNA--protein-cysteine methyltransferase  37.65 
 
 
185 aa  97.4  1e-19  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_5231  methylated-DNA--protein-cysteine methyltransferase  39.51 
 
 
177 aa  97.4  1e-19  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008542  Bcen2424_3152  AraC family transcriptional regulator  38.89 
 
 
363 aa  97.4  1e-19  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.00000475647  n/a   
 
 
-
 
NC_011992  Dtpsy_1828  methylated-DNA/protein-cysteine methyltransferase  40.88 
 
 
182 aa  97.1  2e-19  Acidovorax ebreus TPSY  Bacteria  normal  0.589949  n/a   
 
 
-
 
NC_008048  Sala_2282  AraC family transcriptional regulator  37.82 
 
 
345 aa  97.1  2e-19  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_2819  methylated-DNA--protein-cysteine methyltransferase  37.65 
 
 
185 aa  95.9  3e-19  Shewanella baltica OS185  Bacteria  normal  0.820646  n/a   
 
 
-
 
NC_013165  Shel_09920  O-6-methylguanine DNA methyltransferase  48.35 
 
 
158 aa  95.5  4e-19  Slackia heliotrinireducens DSM 20476  Bacteria  normal  hitchhiker  0.0000425179 
 
 
-
 
NC_008786  Veis_2561  methylated-DNA--protein-cysteine methyltransferase  41.14 
 
 
180 aa  95.9  4e-19  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.0693579 
 
 
-
 
NC_008782  Ajs_2019  methylated-DNA--protein-cysteine methyltransferase  40.25 
 
 
182 aa  95.5  4e-19  Acidovorax sp. JS42  Bacteria  normal  0.0423213  normal 
 
 
-
 
NC_007951  Bxe_A4482  AraC family transcriptional regulator  37.82 
 
 
401 aa  95.5  4e-19  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.00000000221745  unclonable  0.0000015212 
 
 
-
 
NC_011757  Mchl_4687  transcriptional regulator, AraC family  42.31 
 
 
361 aa  95.5  4e-19  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_3353  methylated-DNA--protein-cysteine methyltransferase  33.33 
 
 
282 aa  95.1  5e-19  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2530  methylated-DNA--protein-cysteine methyltransferase  52.94 
 
 
191 aa  95.1  5e-19  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1368  methylated-DNA--protein-cysteine methyltransferase  36.71 
 
 
188 aa  95.5  5e-19  Shewanella sp. MR-4  Bacteria  normal  hitchhiker  0.00805011 
 
 
-
 
NC_008322  Shewmr7_1433  methylated-DNA--protein-cysteine methyltransferase  36.71 
 
 
188 aa  95.5  5e-19  Shewanella sp. MR-7  Bacteria  normal  normal  0.523278 
 
 
-
 
NC_008463  PA14_37190  O6-methylguanine-DNA methyltransferase  52.87 
 
 
358 aa  95.5  5e-19  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0320795  normal 
 
 
-
 
NC_010322  PputGB1_0740  AraC family transcriptional regulator  42.4 
 
 
350 aa  95.5  5e-19  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A2491  regulatory protein ada  40.15 
 
 
353 aa  95.5  5e-19  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2496  methylated-DNA--protein-cysteine methyltransferase  37.5 
 
 
185 aa  94.7  7e-19  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2292  methylated-DNA--protein-cysteine methyltransferase  49.06 
 
 
172 aa  94.7  7e-19  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_2450  transcriptional regulator, AraC family  41.04 
 
 
361 aa  94.7  7e-19  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_1558  methylated-DNA/protein-cysteine methyltransferase  37.5 
 
 
185 aa  94.7  7e-19  Shewanella baltica OS223  Bacteria  normal  0.382587  hitchhiker  0.00333617 
 
 
-
 
NC_009708  YpsIP31758_1834  methylated-DNA--protein-cysteine methyltransferase  49.06 
 
 
172 aa  94.7  7e-19  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1945  methylated-DNA--protein-cysteine methyltransferase  49.06 
 
 
172 aa  94.7  7e-19  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2300  regulatory protein ada (regulatory protein of adaptative response)  37.82 
 
 
364 aa  94.7  8e-19  Burkholderia mallei NCTC 10247  Bacteria  hitchhiker  0.000121844  n/a   
 
 
-
 
NC_009997  Sbal195_2939  methylated-DNA--protein-cysteine methyltransferase  37.5 
 
 
185 aa  94.7  8e-19  Shewanella baltica OS195  Bacteria  normal  0.557137  normal  0.0563179 
 
 
-
 
NC_006348  BMA0115  ADA regulatory protein  37.82 
 
 
364 aa  94.7  8e-19  Burkholderia mallei ATCC 23344  Bacteria  hitchhiker  0.0000393468  n/a   
 
 
-
 
NC_011205  SeD_A2608  regulatory protein ada  40.15 
 
 
352 aa  94.7  8e-19  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.669578 
 
 
-
 
NC_009076  BURPS1106A_0132  ADA regulatory protein  37.82 
 
 
364 aa  94.7  8e-19  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0622499  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2836  ADA regulatory protein  37.82 
 
 
364 aa  94.7  8e-19  Burkholderia mallei SAVP1  Bacteria  hitchhiker  0.00000000000994394  n/a   
 
 
-
 
NC_009080  BMA10247_2323  ADA regulatory protein  37.82 
 
 
364 aa  94.7  8e-19  Burkholderia mallei NCTC 10247  Bacteria  decreased coverage  0.00000161007  n/a   
 
 
-
 
NC_008836  BMA10229_A2249  ADA regulatory protein  37.82 
 
 
364 aa  94.7  8e-19  Burkholderia mallei NCTC 10229  Bacteria  hitchhiker  0.000000255362  n/a   
 
 
-
 
NC_011083  SeHA_C2505  regulatory protein ada  40.15 
 
 
352 aa  94.4  9e-19  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.899315  hitchhiker  0.000630655 
 
 
-
 
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