16 homologs were found in PanDaTox collection
for query gene PC1_1624 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012917  PC1_1624  TIR protein  100 
 
 
330 aa  676    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_2207  hypothetical protein  58.16 
 
 
401 aa  175  9e-43  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_0366  hypothetical protein  49.24 
 
 
262 aa  151  1e-35  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0254  TIR (Toll-Interleukin 1-resistance) domain containing protein-like protein  40 
 
 
279 aa  131  1.0000000000000001e-29  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_1450  hypothetical protein  30.71 
 
 
362 aa  84.3  0.000000000000002  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.252618  n/a   
 
 
-
 
NC_010581  Bind_1772  WD repeat-containing protein  33.58 
 
 
981 aa  80.5  0.00000000000003  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011732  PCC7424_5586  ATPase  34 
 
 
504 aa  67  0.0000000005  Cyanothece sp. PCC 7424  Bacteria  n/a    n/a   
 
 
-
 
NC_004310  BR0735  hypothetical protein  29.32 
 
 
277 aa  65.9  0.0000000009  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0731  hypothetical protein  29.32 
 
 
325 aa  65.1  0.000000001  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_002950  PG0382  hypothetical protein  29.52 
 
 
490 aa  63.9  0.000000004  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.854093 
 
 
-
 
NC_007298  Daro_3653  ATPas  34.94 
 
 
487 aa  62  0.00000001  Dechloromonas aromatica RCB  Bacteria  decreased coverage  5.96179e-19  normal 
 
 
-
 
NC_003296  RS02992  hypothetical protein  29.31 
 
 
521 aa  59.3  0.00000009  Ralstonia solanacearum GMI1000  Bacteria  unclonable  0.000000718056  normal  0.615169 
 
 
-
 
NC_013132  Cpin_1561  protein of unknown function DUF323  24.65 
 
 
361 aa  54.3  0.000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A2310  TIR protein  31.58 
 
 
293 aa  48.5  0.0001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  hitchhiker  0.00000000000002638 
 
 
-
 
NC_009717  Xaut_4938  hypothetical protein  25.86 
 
 
167 aa  46.6  0.0005  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_6784  TPR repeat-containing protein  25.93 
 
 
1526 aa  46.6  0.0006  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
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