| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1624 |
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| Symbol | |
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| ID | 8132565 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 1872977 |
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| End bp | 1873969 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 644864911 |
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| Product | TIR protein |
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| Protein accession | YP_003017201 |
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| Protein GI | 253688011 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4916] Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCCAGAAA TAAGAGATTT TGATATTGCT CTATCGTTCG CAGGTGAAGA CAGAAACTAC
GTTCACCAGG TAGCTAATCT TTTAATTCAA TCAGGTGTAA AAGTGTTTTA TGATTCATTT
GAAGAAGCTG ATCTATGGGG AAAAGATCTT TATACCTATC TTAACGAAAT ATATAAAGAC
AAAGCTTTTT ATACTATAAT GTTTATTTCC GAACATTATG CCAAGAAATT ATGGACAAAT
CATGAAAGAA AAGCAATGCA AGCAAGGGCT TTTCAGGAGA GTGCTGAATA TATTCTTCCC
GCTAAGTTTG ATGATACAGA AATTCCTGGT GTGCTACCTA CAACCGGTTT CATATCTCTT
ATAGAACGCA CTCCTGAAAG CTTTGTTGAG ATAATCCATA AAAAATTGGT AAATAGTGGG
AGGACGATAC CCTCAGAATC TTTAAGAAAG TCTTTTTTTT CAACAATTTC TCTACCAAAA
ATAGAACCAT TGCTATTAAG AGTAATCATA AAATCTTCGA CAGGAGAATT GATTCCATCG
GCATCAATCG TTGCTATCGC AGACAATAAT ACTATTAAGC AGGGTACAAC TGATGCGAAT
GGATGTCTAA CCTTAGAAAT TTTAACTCGC AGAAATTATT CTATACTAGT AGCTCATCCA
AAATTCCCCG GTGTTATAAT ACCTAAATGG GACCCAGCCG AAGATATTGA AATAACTTTG
TCATCTACTG AAACAATTGG CTCTGTAATA ATTAATGGCA CTGGATATAT TGAAGGTTTA
GAGGGACGGC TAAATCCTAT TTTGGATAAT ATAAGCAGAA CATATCTTTA TGCGAATAAC
ATAGCCATAA ATGGTGGAAA AGGGCAAGCA GTTGATTTTG AAATCAACAC CCCAATTACA
CTTGAAGACT GTAATGGTGT TATAATTGAA GCTAGCTTTC TTCATATTCA AGGTAACACC
TCATTAATTC AATATTACCA TCCCCGTAAA TAA
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| Protein sequence | MPEIRDFDIA LSFAGEDRNY VHQVANLLIQ SGVKVFYDSF EEADLWGKDL YTYLNEIYKD
KAFYTIMFIS EHYAKKLWTN HERKAMQARA FQESAEYILP AKFDDTEIPG VLPTTGFISL
IERTPESFVE IIHKKLVNSG RTIPSESLRK SFFSTISLPK IEPLLLRVII KSSTGELIPS
ASIVAIADNN TIKQGTTDAN GCLTLEILTR RNYSILVAHP KFPGVIIPKW DPAEDIEITL
SSTETIGSVI INGTGYIEGL EGRLNPILDN ISRTYLYANN IAINGGKGQA VDFEINTPIT
LEDCNGVIIE ASFLHIQGNT SLIQYYHPRK
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