65 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Elen_0001  CDS  NC_013204  67  1182  1116  transcriptional regulator, TrmB  YP_003180385  decreased coverage  6.56108e-07  hitchhiker  1.26577e-07  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_0002  CDS  NC_013204  1306  2868  1563  chromosomal replication initiator protein DnaA  YP_003180386  decreased coverage  2.22997e-06  hitchhiker  1.4852e-07  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_0005  CDS  NC_013204  5609  6184  576  hypothetical protein  YP_003180389  decreased coverage  1.14784e-07  hitchhiker  3.16421e-07  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_0022  CDS  NC_013204  31390  31683  294  ribosomal protein S6  YP_003180405  decreased coverage  4.173e-08  normal  0.882806  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_0023  CDS  NC_013204  31742  32197  456  single-strand binding protein  YP_003180406  decreased coverage  8.13945e-08  normal  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_0311  CDS  NC_013204  406105  407577  1473  ABC transporter related  YP_003180691  decreased coverage  0.00385444  normal  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_0422  CDS  NC_013204  541107  543527  2421  anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family  YP_003180800  normal  0.0580651  decreased coverage  5.95111e-10  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_0582  CDS  NC_013204  737458  737943  486  hypothetical protein  YP_003180956  decreased coverage  1.12587e-07  normal  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_0623  CDS  NC_013204  796231  797538  1308  transposase mutator type  YP_003180997  decreased coverage  0.00824181  normal  0.550173  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_0672  CDS  NC_013204  849922  851037  1116  agmatine deiminase  YP_003181043  normal  0.915937  decreased coverage  4.89111e-06  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_0738  CDS  NC_013204  930794  931474  681  two component transcriptional regulator, winged helix family  YP_003181106  decreased coverage  4.82292e-05  normal  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_0739  CDS  NC_013204  931653  931859  207  hypothetical protein  YP_003181107  decreased coverage  5.26566e-05  normal  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_0740  CDS  NC_013204  931908  932837  930  hypothetical protein  YP_003181108  decreased coverage  0.000338455  normal  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_0774  CDS  NC_013204  971650  972552  903  4Fe-4S ferredoxin iron-sulfur binding domain protein  YP_003181139  decreased coverage  0.00763219  normal  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_0942  CDS  NC_013204  1145707  1147314  1608  GMP synthase, large subunit  YP_003181303  decreased coverage  0.00705801  normal  0.0196156  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_0958  CDS  NC_013204  1165733  1166104  372  ribosomal protein S12  YP_003181319  decreased coverage  1.10265e-06  hitchhiker  3.99802e-09  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_0959  CDS  NC_013204  1166221  1166691  471  ribosomal protein S7  YP_003181320  decreased coverage  1.5006e-06  hitchhiker  1.43074e-10  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_0960  CDS  NC_013204  1166707  1168824  2118  translation elongation factor G  YP_003181321  hitchhiker  0.000224995  decreased coverage  7.93105e-13  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_1077  CDS  NC_013204  1301576  1302469  894  hypothetical protein  YP_003181437  decreased coverage  2.60914e-07  hitchhiker  1.2089e-12  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_1088  CDS  NC_013204  1314539  1316179  1641  transcription termination factor Rho  YP_003181448  decreased coverage  0.00846053  hitchhiker  5.41512e-14  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_1266  CDS  NC_013204  1520661  1522823  2163  ABC transporter related  YP_003181625  decreased coverage  0.000152073  normal  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_1288  CDS  NC_013204  1543913  1545055  1143  aldo/keto reductase  YP_003181646  decreased coverage  0.00132555  normal  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_1289  CDS  NC_013204  1545147  1545809  663  endonuclease III  YP_003181647  decreased coverage  0.00130293  normal  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1423  CDS  NC_013204  1695907  1697469  1563  protein of unknown function DUF6 transmembrane  YP_003181781  decreased coverage  1.66292e-06  normal  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_1558  CDS  NC_013204  1853569  1854108  540  lipoprotein signal peptidase  YP_003181915  normal  0.714607  decreased coverage  0.00460941  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_1609  CDS  NC_013204  1906517  1908031  1515  ABC transporter related  YP_003181966  decreased coverage  3.0441e-06  hitchhiker  4.75647e-13  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1610  CDS  NC_013204  1908425  1908691  267  hypothetical protein  YP_003181967  decreased coverage  4.86292e-08  hitchhiker  7.83078e-15  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_1611  CDS  NC_013204  1908816  1909454  639  SOS-response transcriptional repressor, LexA  YP_003181968  decreased coverage  1.60494e-07  unclonable  3.1983e-16  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1618  CDS  NC_013204  1916952  1917629  678  regulatory protein RecX  YP_003181975  decreased coverage  1.17054e-05  hitchhiker  9.11842e-10  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1625  CDS  NC_013204  1925956  1927728  1773  beta-lactamase domain protein  YP_003181982  decreased coverage  0.000210591  hitchhiker  1.43957e-06  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_1661  CDS  NC_013204  1963120  1963428  309  hypothetical protein  YP_003182018  decreased coverage  3.71749e-08  hitchhiker  8.41753e-05  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1662  CDS  NC_013204  1963621  1964346  726  orotidine 5'-phosphate decarboxylase  YP_003182019  decreased coverage  1.83413e-07  hitchhiker  0.000549225  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1671  CDS  NC_013204  1971893  1973407  1515  carbamoyl-phosphate synthase, small subunit  YP_003182026  decreased coverage  0.00077424  hitchhiker  0.00974752  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1734  CDS  NC_013204  2041277  2042422  1146  ribonuclease D  YP_003182088  normal  0.312389  decreased coverage  0.00186691  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1735  CDS  NC_013204  2042498  2043409  912  diacylglycerol kinase catalytic region  YP_003182089  normal  0.137383  decreased coverage  0.00310511  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1929  CDS  NC_013204  2260414  2261919  1506  trigger factor  YP_003182282  decreased coverage  2.13413e-05  normal  0.0186919  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1950  CDS  NC_013204  2288356  2288598  243  glutaredoxin  YP_003182303  decreased coverage  1.81605e-05  normal  0.405053  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1957  CDS  NC_013204  2296044  2296529  486  ybaK/ebsC protein  YP_003182310  decreased coverage  0.000134669  normal  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1958  CDS  NC_013204  2296626  2298122  1497  ErfK/YbiS/YcfS/YnhG family protein  YP_003182311  decreased coverage  0.00199371  normal  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1979  CDS  NC_013204  2318079  2320277  2199  metal dependent phosphohydrolase  YP_003182332  decreased coverage  1.84282e-05  normal  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_1985  CDS  NC_013204  2329460  2329909  450  Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ  YP_003182338  decreased coverage  0.00660772  normal  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_2085  CDS  NC_013204  2452117  2452965  849  protein of unknown function DUF152  YP_003182437  hitchhiker  1.13005e-05  decreased coverage  5.3007e-15  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_2164  CDS  NC_013204  2546237  2546635  399  ribosomal protein S8  YP_003182516  decreased coverage  0.00791541  normal  0.949084  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_2239  CDS  NC_013204  2632306  2632776  471  transcription elongation factor GreA  YP_003182589  decreased coverage  1.31275e-07  normal  0.39945  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2240  CDS  NC_013204  2632909  2633172  264  twin-arginine translocation protein, TatA/E family subunit  YP_003182590  decreased coverage  7.05508e-08  normal  0.483483  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2585  CDS  NC_013204  3024164  3024862  699  hypothetical protein  YP_003182927  decreased coverage  2.03897e-06  normal  0.20088  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2595  CDS  NC_013204  3034403  3034651  249  hypothetical protein  YP_003182936  hitchhiker  0.00100615  decreased coverage  1.05284e-07  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2596  CDS  NC_013204  3034746  3034988  243  hypothetical protein  YP_003182937  hitchhiker  0.00127273  decreased coverage  9.97476e-08  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2597  CDS  NC_013204  3034985  3035389  405  hypothetical protein  YP_003182938  hitchhiker  0.00018829  decreased coverage  1.12855e-07  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_2598  CDS  NC_013204  3035386  3035811  426  endodeoxyribonuclease RusA  YP_003182939  decreased coverage  3.97063e-05  decreased coverage  1.07809e-07  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_2599  CDS  NC_013204  3035804  3036319  516  hypothetical protein  YP_003182940  decreased coverage  5.35774e-05  decreased coverage  1.06926e-07  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_2600  CDS  NC_013204  3036367  3036687  321  hypothetical protein  YP_003182941  decreased coverage  3.59903e-05  decreased coverage  1.0285e-07  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_2601  CDS  NC_013204  3036680  3037735  1056  hypothetical protein  YP_003182942  hitchhiker  8.31419e-05  decreased coverage  1.47354e-07  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_2602  CDS  NC_013204  3037725  3038258  534  ERF family protein  YP_003182943  hitchhiker  0.00578312  decreased coverage  2.32588e-08  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_2603  CDS  NC_013204  3038258  3038605  348  hypothetical protein  YP_003182944  normal  0.0666557  decreased coverage  8.04473e-08  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2604  CDS  NC_013204  3038602  3039108  507  single-strand binding protein  YP_003182945  normal  0.137931  decreased coverage  9.24052e-08  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2605  CDS  NC_013204  3039119  3039814  696  hypothetical protein  YP_003182946  normal  0.272748  decreased coverage  1.06926e-07  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_2606  CDS  NC_013204  3039843  3040478  636  DNA replication protein-like protein  YP_003182947  normal  decreased coverage  8.82358e-08  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_2805  CDS  NC_013204  3254586  3255212  627  ribosomal protein S4  YP_003183141  unclonable  8.15748e-09  decreased coverage  5.63481e-09  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_2806  CDS  NC_013204  3255232  3255630  399  ribosomal protein S11  YP_003183142  unclonable  3.65846e-09  decreased coverage  4.90593e-09  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_3074  CDS  NC_013204  3574207  3575229  1023  hydrogenase expression/formation protein HypE  YP_003183406  decreased coverage  0.000468886  normal  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_3113  CDS  NC_013204  3622688  3623332  645  hypothetical protein  YP_003183444  normal  0.0198257  decreased coverage  5.49936e-10  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_3122  CDS  NC_013204  3630820  3631053  234  protein of unknown function DUF37  YP_003183453  decreased coverage  5.66659e-08  hitchhiker  5.40295e-08  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_3123  CDS  NC_013204  3631065  3631391  327  ribonuclease P protein component  YP_003183454  decreased coverage  8.70513e-08  hitchhiker  6.10775e-08  Eggerthella lenta DSM 2243  Bacteria 
 
 
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Elen_R0031  tRNA  NC_013204  2267796  2267872  77  tRNA-His    decreased coverage  1.76121e-06  normal  0.0395456  Eggerthella lenta DSM 2243  Bacteria 
 
 
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