23 homologs were found in PanDaTox collection
for query gene Ssed_1924 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009831  Ssed_1924  cyclic nucleotide binding protein, putative  100 
 
 		 222 aa  466  9.999999999999999e-131  Shewanella sediminis HAW-EB3  Bacteria  normal  1  normal  1 
 
 
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NC_009831  Ssed_3683  cyclic nucleotide binding protein, putative  46.51 
 
 		 220 aa  216  2e-55  Shewanella sediminis HAW-EB3  Bacteria  normal  1  normal  1 
 
 
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NC_004347  SO_4298  cyclic nucleotide binding protein, putative  39.27 
 
 		 224 aa  155  5.0000000000000005e-37  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
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NC_009438  Sputcn32_3489  cyclic nucleotide-binding protein  38.22 
 
 		 224 aa  150  1e-35  Shewanella putrefaciens CN-32  Bacteria  normal  1  n/a   
 
 
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NC_013457  VEA_000333  predicted N-ribosylNicotinamide CRP-like regulator  38.78 
 
 		 226 aa  144  8.000000000000001e-34  Vibrio sp. Ex25  Bacteria  hitchhiker  0.000000153311  n/a   
 
 
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NC_009456  VC0395_0003  putative cyclic nucleotide binding protein  38.74 
 
 		 226 aa  141  9.999999999999999e-33  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000897853  n/a   
 
 
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NC_009784  VIBHAR_06137  hypothetical protein  38.95 
 
 		 226 aa  139  3e-32  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
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NC_009901  Spea_3786  cyclic nucleotide-binding protein  32.46 
 
 		 223 aa  129  5.0000000000000004e-29  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
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NC_004347  SO_2717  cyclic nucleotide binding protein, putative  32.46 
 
 		 226 aa  127  1.0000000000000001e-28  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
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NC_009997  Sbal195_1840  cyclic nucleotide-binding protein  32.42 
 
 		 226 aa  124  8.000000000000001e-28  Shewanella baltica OS195  Bacteria  hitchhiker  0.00716362  normal  1 
 
 
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NC_008577  Shewana3_2501  cyclic nucleotide-binding protein  31.75 
 
 		 226 aa  124  1e-27  Shewanella sp. ANA-3  Bacteria  normal  0.0611932  hitchhiker  0.00056277 
 
 
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NC_009438  Sputcn32_1659  cyclic nucleotide-binding protein  31.41 
 
 		 226 aa  123  2e-27  Shewanella putrefaciens CN-32  Bacteria  normal  0.0131527  n/a   
 
 
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NC_009831  Ssed_3273  cyclic nucleotide binding protein, putative  31.41 
 
 		 238 aa  124  2e-27  Shewanella sediminis HAW-EB3  Bacteria  normal  0.715975  normal  0.0894571 
 
 
-
 
NC_010506  Swoo_3424  cyclic nucleotide-binding protein  29.67 
 
 		 226 aa  117  1.9999999999999998e-25  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009052  Sbal_3793  cyclic nucleotide-binding protein  31.16 
 
 		 230 aa  113  2.0000000000000002e-24  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_009997  Sbal195_0546  cyclic nucleotide-binding protein  31.16 
 
 		 230 aa  113  2.0000000000000002e-24  Shewanella baltica OS195  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011663  Sbal223_0551  cyclic nucleotide-binding protein  31.16 
 
 		 230 aa  112  3e-24  Shewanella baltica OS223  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008532  STER_0206  transcriptional regulator  30.32 
 
 		 212 aa  53.9  0.000002  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.00000707778  n/a   
 
 
-
 
NC_004347  SO_0091  hypothetical protein  23.2 
 
 		 198 aa  53.1  0.000004  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007794  Saro_2016  Crp/FNR family transcriptional regulator  28.1 
 
 		 229 aa  47  0.0002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0776172  n/a   
 
 
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NC_009972  Haur_2884  Crp/FNR family transcriptional regulator  19.8 
 
 		 218 aa  46.6  0.0003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.161359  n/a   
 
 
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NC_009767  Rcas_0252  Crp/FNR family transcriptional regulator  20.2 
 
 		 218 aa  44.7  0.001  Roseiflexus castenholzii DSM 13941  Bacteria  unclonable  0.00000185636  normal  0.131428 
 
 
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NC_009523  RoseRS_0292  CRP/FNR family transcriptional regulator  18.32 
 
 		 224 aa  43.1  0.004  Roseiflexus sp. RS-1  Bacteria  normal  0.210312  normal  0.0189188 
 
 
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