| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1924 |
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| Symbol | |
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| ID | 5611215 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2313621 |
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| End bp | 2314289 |
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| Gene Length | 669 bp |
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| Protein Length | 222 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640932810 |
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| Product | cyclic nucleotide binding protein, putative |
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| Protein accession | YP_001473663 |
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| Protein GI | 157375063 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGATTCAA TAAACTCATT AGCAGAGCAA GGCTTTAAAA TATTTTGTCG GGAAATTGAG
CTACGCGCCC TTAAAACTAA GGTATTCTAC CCTTGCGAAT ATCTACTTCA TCAGGGACAG
GAGATCCTTG AACTCTTTTG GGTTGAGTCA GGAAAGTTCA CCATAGATTA TACGGCTAAC
AACGGACGAA TATATAATCT GGGGCTTAAC GTCGTCGAAC ATCATCTTTT TGGCGAAGTG
GAATACTTAA CCTCAAGTCC ATGCCAATTC AATGTGAAAG CAAGTGAAAT TGTTCAAACA
AAAGTCTTGC CCGCGAAATT AATGACCGAG ATACTTCAAG TCGATCCAAG TGTTGGAATA
TGGATGAGTC AGGCCCTTTC CAGCCGTTAT CAGGCCGGAA TGACGATGAC AATGAACCGC
TTTCTTCATC CACTTATCTA TAATATTGCA TGGGACTTTC AGCAACGCTT TATCGGTGCA
AAGCCTGCAG TCAGCTTTTC TCATGTTTAC AAAGAAGCTG AACGTTTTGG CTGCTCAGAG
CGTGTATATA GCCGGGTTGT GAACCAACTG CTCGATATGG CACTTATAGA GAAGGTTGAG
AATCAACTAC ATGTGAAAGA TATTGAGGCG CTAACCACTT TTCTATCGAT GAACCAAAGT
AATAAATAG
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| Protein sequence | MDSINSLAEQ GFKIFCREIE LRALKTKVFY PCEYLLHQGQ EILELFWVES GKFTIDYTAN
NGRIYNLGLN VVEHHLFGEV EYLTSSPCQF NVKASEIVQT KVLPAKLMTE ILQVDPSVGI
WMSQALSSRY QAGMTMTMNR FLHPLIYNIA WDFQQRFIGA KPAVSFSHVY KEAERFGCSE
RVYSRVVNQL LDMALIEKVE NQLHVKDIEA LTTFLSMNQS NK
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