21 homologs were found in PanDaTox collection
for query gene Shew_1261 on replicon NC_009092
Organism: Shewanella loihica PV-4



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009952  Dshi_2101  hypothetical protein  56.62 
 
 		 864 aa  957    Dinoroseobacter shibae DFL 12  Bacteria  normal  0.460219  normal  1 
 
 
-
 
NC_009092  Shew_1261  type III restriction enzyme, res subunit  100 
 
 		 861 aa  1769    Shewanella loihica PV-4  Bacteria  normal  0.392356  normal  0.0808521 
 
 
-
 
NC_011879  Achl_4044  type III restriction protein res subunit  30.03 
 
 		 867 aa  337  3.9999999999999995e-91  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.856779 
 
 
-
 
CP001637  EcDH1_3329  type III restriction enzyme, res subunit  66.12 
 
 		 243 aa  337  5.999999999999999e-91  Escherichia coli DH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013515  Smon_1418  type III restriction protein res subunit  22.83 
 
 		 751 aa  71.2  0.00000000007  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_011658  BCAH187_A5300  type III restriction enzyme, res subunit family  23.9 
 
 		 729 aa  62.8  0.00000003  Bacillus cereus AH187  Bacteria  unclonable  0.0000000832274  n/a   
 
 
-
 
NC_008321  Shewmr4_2778  type III restriction enzyme, res subunit  36.84 
 
 		 885 aa  55.1  0.000006  Shewanella sp. MR-4  Bacteria  normal  1  normal  0.223386 
 
 
-
 
NC_008346  Swol_1462  superfamily II DNA/RNA helicase  23.16 
 
 		 736 aa  54.3  0.00001  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  1  n/a   
 
 
-
 
NC_009483  Gura_2739  hypothetical protein  34.57 
 
 		 881 aa  50.8  0.0001  Geobacter uraniireducens Rf4  Bacteria  normal  0.0746674  n/a   
 
 
-
 
NC_012917  PC1_0850  type III restriction protein res subunit  39.62 
 
 		 877 aa  50.8  0.0001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011725  BCB4264_A0973  type III restriction enzyme, res subunit family  38.78 
 
 		 892 aa  50.8  0.0001  Bacillus cereus B4264  Bacteria  normal  0.0241934  n/a   
 
 
-
 
NC_008782  Ajs_4095  type III restriction enzyme, res subunit  45.61 
 
 		 899 aa  50.8  0.0001  Acidovorax sp. JS42  Bacteria  normal  0.18343  normal  0.460419 
 
 
-
 
NC_009483  Gura_4389  type III restriction enzyme, res subunit  39.02 
 
 		 858 aa  49.3  0.0003  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_008738  Maqu_4239  type III restriction enzyme, res subunit  25.32 
 
 		 907 aa  48.5  0.0005  Marinobacter aquaeolei VT8  Bacteria  n/a    n/a   
 
 
-
 
NC_008739  Maqu_4078  type III restriction enzyme, res subunit  25.32 
 
 		 913 aa  48.5  0.0006  Marinobacter aquaeolei VT8  Bacteria  normal  0.778545  n/a   
 
 
-
 
NC_007517  Gmet_0675  Type III restriction enzyme, res subunit  31.25 
 
 		 898 aa  48.5  0.0006  Geobacter metallireducens GS-15  Bacteria  normal  1  normal  0.564365 
 
 
-
 
NC_013207  Aaci_3087  type III restriction protein res subunit  38.78 
 
 		 835 aa  48.5  0.0006  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  n/a    n/a   
 
 
-
 
NC_011060  Ppha_0344  type III restriction protein res subunit  26.12 
 
 		 893 aa  48.1  0.0008  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007404  Tbd_2275  hypothetical protein  36.84 
 
 		 902 aa  45.8  0.004  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010506  Swoo_0304  type III restriction protein res subunit  40.82 
 
 		 890 aa  44.7  0.007  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002977  MCA0026  type III restriction-modification system, R subunit, putative  23.32 
 
 		 882 aa  44.7  0.008  Methylococcus capsulatus str. Bath  Bacteria  normal  0.352538  n/a   
 
 
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