Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1261 |
Symbol | |
ID | 4920654 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1457762 |
End bp | 1460347 |
Gene Length | 2586 bp |
Protein Length | 861 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640162801 |
Product | type III restriction enzyme, res subunit |
Protein accession | YP_001093390 |
Protein GI | 127512193 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1061] DNA or RNA helicases of superfamily II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.392356 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0808521 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTTTA CCCTTAAGGA CTATCAACGC GACGCAGTAC GAGATGCATT GAACAACCTC AAAGATGCCC AGGATGACTG GCGACGCAAG TCGCGTAAAT GTGCGTTTTC ACTGACTGCG GTCACTGGTG CAGGTAAGAC GGTGATGGCC GCTGCCGCTT TCGAAGCGTT GTTTCACGGT GATGATGAAT TTGATTTCGA CGCAGACCCC GGTGCAGTGG TGATCTGGTT TAGTGATGAT CCGTCACTAA ACGAGCAGAC GCGCTTCCGC TTGATGGAAG CGAGCGACCG TATTAATCAC ACCGATTTGG TAGTGGTAGA AAACACCTTT AATCGTCCCC GATTCGAAGC TGGGAAAATT TATTTTCTTA ACACCCAAAA GTTGGGCAAA AATAGCTTGT TGGTGCGTGG CCACAACCAG GAAGAATTGG AAGCCCAGGC TGGCTCTTTG TTTCCTGAAA CTCGGCCAGA TCTGCGTGCA TACACCATCT GGGATACGAT CCAAAATACG ATTGAAGACC CCGAATTAAC TTTGTATCTG GTGCTGGACG AAGCTCATCG TGGCATGGGC AATGCCGCAG TTAAAGAAAA AGGCACCATA GTGCAGCGCT TAATTAATGG TTTTGGCAGT GTGCCGGGTA TCCCTGTAGT GTGGGGAATT TCGGCAACAG TAGAGCGATT TAACAAGGCG ATCGAGTGCG CGGGTAAGCA CATCAAGCTG CCCAATGTCG TAGTGGATGC GGACAAGGTG CAGGAGTCCG GCTTGATTAA AGACACCATC TTGCTAGATA TTCCCGACGA AACAGGCGAC TTCGATACTG TGCTTGTACG GCGAGCGACA GACAAGTTGA AAGAATCCAC TATTGCTTGG CAGGAGTATA CCAAACAACA GGAGGAGGCT CGCGTTGTTG TTCCGATGAT GGTGCTTCAG GTACCTAATA CGCCGGACCC AAATGAGATC GGTAGGGCAC TGGATACCAT ATTTGATCGC TACCCAGAAT TGCCTGCTAC CAGTGTGGCG CATGTTTTTG GTGATCACAC CACGCAGCAA TTCGGTAACC ACAATGTGCC GTACATCGAA CCGCAACGAG TGCAGGATTC CACTTGGGTG AGGGTATTGA TTGCAAAAGA TGCCATTAGC ACCGGTTGGG ATTGCCCGCG TGCGGAAGTG ATGGTTTCTT TCCGCGCTGC CAGCGACCGC ACACATATAA CCCAATTGCT CGGCCGGATG GTGCGTTCGC CTTTAGCCCG CCGCATCCCT GGTAATGATC GACTCAATGC TGTGGATTGT TTGCTGCCGA AGTTCAACCG CAAGACGGTT GAAGAGGTGG TGGATGCATT AATGAATGGC GATGATTCTG CACCACCAAC CGGGCGCATT TTGGTTGATT ATGTGGAATT GAAGCCTCAC CCTAAGGCCA ACAAGTCCGT TTGGGATGCG TTTGAAGCTC TGCCGTCTCA GAACCGTCCA CAGCGTGGTG CAAAACCGGC AAAGCGTCTT ACCGTACTGG CCCATGAGTT GGCATCCGAC GGCATTCTGG CTGGTGCAGG CAGGTTGGCT CATGGCGTGT TGCACAAGGC GCTGGATGCA TTCCAGGAAT CTCAAAAAGA TAAGATCCAG GGCAAGCGCA AGTCAGTGCT CACCGTGGAT GGCAAGACGG TTATTGCCGA CATGAAGGGC AAGGAAAAGA CCTTCGATGA GTTTTGGGAA GATGCCGACG TCGCAGTGAT TGACGATGCT TACCGGCGCG CAGCGCGCAT CTTTAGCCCG GATATCGCAA AAACTTATGT TGAACATTTG GCACGACAGG TCGCAGACTT AGACGACGAT CCGGAGGAGT TTCTTGAAGC CATCGTAGAG GCCAGAGTCA CAGTCGCGGG GCTGGGTTTG GTCACTGAAG TTCAAGCTTA TTTCGACGCT GAAGCTGATA AGCTTGCGAA AGAGTGGCTG GTGAAATATG CATCTCAGAT CAAAGCCCTA TCAGACGATC GCAAGGAGTC ATATCGACAG ATCGTGGAGA TGAGTACTGA GCCCCAGAGT TTCGATTTGG TAAAACCTGA ATCTCGCTGT GAAGCAGCCA AGGCACGAGA GAGCGACAAG GAAATCAAAT TCCCAACTTG GAACAATCAT TTACTGTCAG ACAAGGACGG CAAATATCCA GTCGAGATGA ATGAATGGGA GCGCACGGTT GTCGAGGCGG AGTCAAAGCG TGATGGCTTT CTATTCTGGT ATCGCAACCC TCAGCAACCG GGGCAGTCCT CTTTGGGCAT AGCCTATCTT GAAGATGAGC AATTCAAGAT CGTCCGTCCA GACTTTATCT TTTTCGCGGA GCAAGATGAC AAGATCGTAG TGGATTTGGT TGATCCGCAT GGGGTCCATC TGGCTGATGC TCTACCAAAG TTACAGGGCT TGGCAGCTTA TGCAACCAAG CATGCTAACG CTTACCGCCG CATCGAAGCT GTAGCGGAAG CGCATGGCAA GCTGCGTGTG CTCGATTTGA CCCGCACAGA TGTTCGTCAG GCAGTGCTGG ATGCATCGAG CGCGAAGAGT CTGTTCGAAG GTCTATCGGC TGATGATTAT GTATGA
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Protein sequence | MKFTLKDYQR DAVRDALNNL KDAQDDWRRK SRKCAFSLTA VTGAGKTVMA AAAFEALFHG DDEFDFDADP GAVVIWFSDD PSLNEQTRFR LMEASDRINH TDLVVVENTF NRPRFEAGKI YFLNTQKLGK NSLLVRGHNQ EELEAQAGSL FPETRPDLRA YTIWDTIQNT IEDPELTLYL VLDEAHRGMG NAAVKEKGTI VQRLINGFGS VPGIPVVWGI SATVERFNKA IECAGKHIKL PNVVVDADKV QESGLIKDTI LLDIPDETGD FDTVLVRRAT DKLKESTIAW QEYTKQQEEA RVVVPMMVLQ VPNTPDPNEI GRALDTIFDR YPELPATSVA HVFGDHTTQQ FGNHNVPYIE PQRVQDSTWV RVLIAKDAIS TGWDCPRAEV MVSFRAASDR THITQLLGRM VRSPLARRIP GNDRLNAVDC LLPKFNRKTV EEVVDALMNG DDSAPPTGRI LVDYVELKPH PKANKSVWDA FEALPSQNRP QRGAKPAKRL TVLAHELASD GILAGAGRLA HGVLHKALDA FQESQKDKIQ GKRKSVLTVD GKTVIADMKG KEKTFDEFWE DADVAVIDDA YRRAARIFSP DIAKTYVEHL ARQVADLDDD PEEFLEAIVE ARVTVAGLGL VTEVQAYFDA EADKLAKEWL VKYASQIKAL SDDRKESYRQ IVEMSTEPQS FDLVKPESRC EAAKARESDK EIKFPTWNNH LLSDKDGKYP VEMNEWERTV VEAESKRDGF LFWYRNPQQP GQSSLGIAYL EDEQFKIVRP DFIFFAEQDD KIVVDLVDPH GVHLADALPK LQGLAAYATK HANAYRRIEA VAEAHGKLRV LDLTRTDVRQ AVLDASSAKS LFEGLSADDY V
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