| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2101 |
|---|
| Symbol | |
|---|
| ID | 5713097 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 2225466 |
|---|
| End bp | 2228060 |
|---|
| Gene Length | 2595 bp |
|---|
| Protein Length | 864 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641268024 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001533439 |
|---|
| Protein GI | 159044645 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.460219 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTTA CGCTCAAAGA CTACCAAGAC GATGCGGTGG CCCAGGTGCT GGACCGGCTC
AAGAAGGCCC GCAAACGCTG GCACGAGGAT GGCGAGAAGA ACGCCTTTTC CCTGACCGCA
ACCACGGGGG CCGGTAAGAC GGTCATGGCC GCTGCGGTGT TCGAGGCGTT GTTCTTCGGC
TCTGACGACT ATGAGTTTGA GCCTGACCCC GGCGCGGTGG TGATCTGGTT TTCCGATGAT
CCGTCCCTGA ACGAGCAATC CCGGTGGCGG CTGCAAGAGG CAGCGGACAA GCTGACGACC
TCTGACCTTG TGACGGTGGA AAATACGTTC TCACGCGAGG TGTTTGAACC GGGCAAGGTG
TATTTCCTGA ATACGCAGAA GCTGGGCAAG AACTCCATGC TGGTGCGGGG TGCTGACCCA
TCTGACCAAG GTGTTCTGAC CGTCGATGGC ACGCCTTTGA TGCCCGATGG CCGGTCCCAC
ACGATCTGGG ACACGATCCG CAACACCATC GAAGACCCGG ACCTGACTCT TTATCTGGTG
CTGGATGAGG CGCACCGGGG TATGCGGGAT GCAAGGCAAG GAACGCAAAC CATCGTGACG
CGGCTGATCA ACGGTCAAGG CGCGGTGCCC GGTATCCCGA TTGTCTGGGG CGTGTCGGCA
ACCGTGCAGC GGTTCAACGA TGCGGTGAAG TCGATGAAGG ACCGCACCGC GCTGCCGAAC
GTGGTTGTGG ATGCCAAACT GGTGCAGGAA TCGGGCTTGC TTAAGGACAC GATCACACTG
GACGTGCCCG AAGACACAGG CGACTTCACG ACGGTCTTGT TGCGGCGCGG GACGGAGAAG
CTGAAGGAGT CGAGCAAGGC TTGGGCGGCT TATGCGGATG AGCAAGGCGA TAGTGCCAAG
GTCAAGCCGT TGATGGTTTT ACAGGTGCCG AACTCCCCCA ACAAAGATGA TGTGGGAACA
TGGCTGAAGA CCATCTTTGA CGCTTGGCCC GACCTGCCGC CAGACAGCGT TTACAACGTG
TTCGGTGAAC ACAAGGAAGA AAACTTCGGT GGCTTCGTTG TGCCTTACAT CGAACCGCAG
CGTGTTCAGG AAGCGGACCA TGTACGGGTT TTGCTGGCCA AAGATGCAAT CAGCACTGGC
TGGGATTGTC CAAGAGCCGA AGTGATGGTG TCTTTCCGGG CTGCATCTGA CCAGACGCAT
ATTACGCAAC TATTGGGCCG CATGGTACGG ACCCCACTTG CGCGGCGCAT TCCGGGGAAT
GAACGGCTGA ATGCGGTCGA TTGCCTGTTG CCCAAGTTCA ATCAGGAAAC TGTGAAAGCC
GTTGTTGAGG CGCTCATGTC AGGCGGTGAC GCGGGCGATA GTCCGCCTGG ACGCCGAGTG
CTGATCAATC CAAAGGAAAT GGCCCCTAAC CCGGACGTGC CGCAAGCGGT GTGGGACAAG
CTGGTAAGTC TGCCATCTGC CGCTAAGCCC AAGAAGCAAG CGAGACCGAT CAAACGGCTG
ACGGCCTTGG CACATGAACT CGCTGCGGAT GGTTTGTTGG CAAACGCTGG CAAGCAAGCC
CATGCGCATC TGCATGGTGT TTTGGATGCG CAGCGGACAG CCTTAGCGGC GGAGATTGCC
AAAGCACGGA CGGACGTTCT CACGGTCGAA GGCAAGACAG TCAAAACGGA CATTGAAACC
CAGAAGATGA CGTTTGACGA CTTCGTGGAG GCCGCAGACT ATGCGGTGAT CGAAGACGCC
TACAAGCGCG CGGCGCGTTT GATCTCACCC GATCTGGCCA AGACCTACAG CGAACACTTG
GCAGACCAGA ATGCCGACGC GGAAGACTAT GAAGAAGCCT TGATCGAGGC GCACACTGAT
GTTGCGGCCC TCGGGCTTGT GGACACAATC AAAGCCAAGC TGGAAGGCGA GGCCGAAGCC
TTGGCCAATG AATGGCTGAC GGAGCATGAG GCTGCAATCA AAGGGCTGAG TGACGAAAGG
CAGGACGTAT ACCGCGAGTT ACGGGAACTC AGCGCGCACC CGTTGGACGT CATGTTAGCA
GCACCGAAGA TAAGCCTTCA GCCAACGGTG GAAGTGAGAA AGGACAAATC GGAGGTAACA
ATCCCTACTT ATCCACTTCA CCTACTTTGT GATGCAGATG GCTTGTTCCC GTTTCTTGAG
GATTCATCTT GGGAGCCGCT TGTTATCAAA ACGGAAAATG ATCTGTCCGG CGCAGTCGCT
TGGTATCGAA ACCCAAAGTC AGCAAAGCCA GAGTCACTTG GCGTTGTATA TGATTATGGT
GGCGACCCAG AGATTATGCG CCCTGACTTC ATTTTTTTCA GGGAGCGGCC CGATGGAACC
ATTGCAGCGA GTATCGTTGA TCCCCACGGG ACACACTTAG AAGACGCGCT GCCAAAGCTG
CGCGGTCTTT GTGAATACGA AGCAACGCAC GGACACCTTT TTGAACGTAT TGAAGCGGTT
GCTGAAGAAT CAAAGGGCGT TTGCAAGTGT TTGGACTTGA AATCTCCGGA AGTAAGAGCC
GCCGTTGGCG AAGCCACCAA GGCGGCAGCG GTTTTCTCGG GTCCACAAGC AAAGCCGTAT
CCAAGTCACG GCTGA
|
|---|
| Protein sequence | MKFTLKDYQD DAVAQVLDRL KKARKRWHED GEKNAFSLTA TTGAGKTVMA AAVFEALFFG
SDDYEFEPDP GAVVIWFSDD PSLNEQSRWR LQEAADKLTT SDLVTVENTF SREVFEPGKV
YFLNTQKLGK NSMLVRGADP SDQGVLTVDG TPLMPDGRSH TIWDTIRNTI EDPDLTLYLV
LDEAHRGMRD ARQGTQTIVT RLINGQGAVP GIPIVWGVSA TVQRFNDAVK SMKDRTALPN
VVVDAKLVQE SGLLKDTITL DVPEDTGDFT TVLLRRGTEK LKESSKAWAA YADEQGDSAK
VKPLMVLQVP NSPNKDDVGT WLKTIFDAWP DLPPDSVYNV FGEHKEENFG GFVVPYIEPQ
RVQEADHVRV LLAKDAISTG WDCPRAEVMV SFRAASDQTH ITQLLGRMVR TPLARRIPGN
ERLNAVDCLL PKFNQETVKA VVEALMSGGD AGDSPPGRRV LINPKEMAPN PDVPQAVWDK
LVSLPSAAKP KKQARPIKRL TALAHELAAD GLLANAGKQA HAHLHGVLDA QRTALAAEIA
KARTDVLTVE GKTVKTDIET QKMTFDDFVE AADYAVIEDA YKRAARLISP DLAKTYSEHL
ADQNADAEDY EEALIEAHTD VAALGLVDTI KAKLEGEAEA LANEWLTEHE AAIKGLSDER
QDVYRELREL SAHPLDVMLA APKISLQPTV EVRKDKSEVT IPTYPLHLLC DADGLFPFLE
DSSWEPLVIK TENDLSGAVA WYRNPKSAKP ESLGVVYDYG GDPEIMRPDF IFFRERPDGT
IAASIVDPHG THLEDALPKL RGLCEYEATH GHLFERIEAV AEESKGVCKC LDLKSPEVRA
AVGEATKAAA VFSGPQAKPY PSHG
|
|---|
| |